Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 4.8e-154 547.7 266 100.0
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 4.8e-154 547.7 266 100.0
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.1e-150 536.6 266 98.1
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 3.9e-148 528.1 264 97.3
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 5.1e-148 527.7 266 97.4
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 8.7e-148 526.9 266 97.0
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.9e-147 525.8 264 97.0
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 2.5e-147 525.4 266 97.0
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 9.7e-147 523.5 266 96.2
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 4.8e-146 521.2 266 96.2
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 2.4e-145 518.8 266 95.5
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.5
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.5
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 1.7e-143 512.7 266 94.7
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 1.7e-143 512.7 266 94.7
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 2.2e-143 512.3 266 94.7
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 94.7
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 94.7
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 94.7
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 94.7
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 94.7
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 94.7
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 94.7
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 94.7
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 3.8e-143 511.5 266 94.7
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.8e-143 511.5 266 94.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 3.8e-143 511.5 266 94.4
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.1e-142 510.0 263 95.4
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.7
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.7
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 3.2e-142 508.4 266 94.7
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 2.7e-141 505.4 252 98.0
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 3.6e-141 505.0 252 97.6
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 4.6e-141 504.6 263 93.9
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 6.1e-141 504.2 253 97.2
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 7.9e-141 503.8 252 97.6
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 3.9e-140 501.5 252 97.2
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 8.8e-140 500.4 266 93.2
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.5
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.8e-137 492.7 252 96.4
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 5.9e-136 487.6 265 91.7
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.6e-133 479.6 265 89.8
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 1.8e-132 476.1 239 97.5
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 4.4e-131 471.5 243 95.5
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 4.4e-131 471.5 243 95.5
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 5.3e-129 464.5 266 87.6
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.2e-128 463.4 264 88.3
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 5.9e-128 461.1 240 94.6
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 5.9e-128 461.1 263 85.9
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.7e-127 459.5 240 94.2
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 5.0e-127 458.0 262 85.9
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 1.0e-119 433.7 253 87.0
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.2e-117 426.8 261 82.8
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.4e-115 418.3 209 96.7
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 2.8e-114 415.6 213 96.2
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 5.5e-110 401.4 209 94.3
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.6e-109 399.8 252 81.3
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 8.0e-109 397.5 211 94.3
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 8.0e-109 397.5 211 94.3
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.7e-106 388.7 257 78.6
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.9e-106 388.3 209 89.5
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 5.4e-105 384.8 202 94.6
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.1e-102 377.1 209 90.9
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 5.9e-96 354.8 187 94.7
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.0e-87 327.4 184 88.6
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 1.4e-81 307.0 161 93.8
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 6.0e-80 301.6 156 94.9
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 8.1e-77 291.2 249 65.5
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 5.2e-76 288.5 159 90.6
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 6.8e-76 288.1 145 95.2
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.2e-75 287.3 150 95.3
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.6e-72 276.9 148 93.9
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 2.3e-71 273.1 213 67.6
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.6e-71 271.6 145 91.7
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 2.5e-70 269.6 148 89.2
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-67 260.8 195 72.8
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 2.6e-67 259.6 130 96.9
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.7e-66 256.9 279 48.7
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 4.3e-62 242.3 120 100.0
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 9.9e-59 231.1 119 95.0
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.7e-58 230.3 122 93.4
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-57 226.9 160 75.0
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 3.7e-53 212.6 115 93.0
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 2.0e-51 206.8 108 92.6
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 7.6e-51 204.9 103 96.1
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.9e-50 202.2 116 85.3
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 7.1e-49 198.4 105 93.3
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 5.6e-46 188.7 101 94.1
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 6.9e-44 181.8 101 85.1
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 2.2e-42 176.8 85 97.6
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 4.9e-42 175.6 154 63.0
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 6.0e-40 168.7 210 47.1
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.7e-38 162.2 184 52.7
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 6.9e-36 155.2 81 91.4
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 2.6e-35 153.3 260 33.8
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 7.6e-35 151.8 82 92.7
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.9e-34 149.8 108 72.2
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.5e-33 145.6 149 56.4
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 3.9e-31 139.4 88 79.5
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 5.1e-31 139.0 98 73.5
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-29 134.0 82 80.5
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-28 131.3 76 84.2
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 2.5e-25 120.2 63 88.9
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 2.7e-24 116.7 58 96.6
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 2.7e-24 116.7 154 47.4
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.6e-24 116.3 57 94.7
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-24 115.2 79 77.2
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 3.9e-23 112.8 68 79.4
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 2.2e-21 107.1 172 43.6
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.0e-19 100.5 64 78.1
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-17 94.4 67 71.6
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 3.2e-17 93.2 48 87.5
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 5.5e-17 92.4 65 73.8
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-16 90.9 119 46.2
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 8.0e-16 88.6 61 67.2
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 1.5e-14 84.3 53 86.8
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 2.0e-14 84.0 40 90.0
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 7.4e-14 82.0 65 60.0
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-13 81.3 56 76.8
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-13 80.5 53 83.0
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 3.7e-13 79.7 59 72.9
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 8.2e-13 78.6 41 82.9
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-11 72.8 35 91.4
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-10 71.2 84 47.6
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 3.2e-09 66.6 29 100.0
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 4.2e-09 66.2 31 93.5
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-08 64.7 33 84.8
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.2e-08 64.7 118 33.9
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.0e-07 61.6 30 86.7
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 4.0e-07 59.7 32 84.4
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-07 59.7 30 83.3
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.7e-07 58.9 74 44.6
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 8.8e-07 58.5 31 83.9
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 5.7e-06 55.8 58 39.7


User provided reference genes

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