Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 2.2e-140 502.3 254 100.0
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 9.3e-123 443.7 261 87.7
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 9.3e-123 443.7 261 87.7
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 9.3e-123 443.7 261 87.7
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 9.3e-123 443.7 261 87.7
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 9.3e-123 443.7 261 87.7
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 9.3e-123 443.7 261 87.7
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 9.3e-123 443.7 261 87.7
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 9.3e-123 443.7 261 87.7
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 9.3e-123 443.7 261 87.7
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 1.2e-122 443.4 261 87.7
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 9.0e-118 427.2 224 97.3
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-117 425.6 237 92.4
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 4.5e-117 424.9 237 92.0
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.2e-116 422.5 235 92.8
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 3.8e-116 421.8 235 92.8
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.9e-115 419.5 235 92.3
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 4.2e-115 418.3 237 90.7
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.3e-115 417.2 223 94.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.2e-114 416.8 235 91.9
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.2e-114 416.8 235 91.9
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.2e-114 416.8 235 91.9
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 3.5e-114 415.2 235 91.9
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 3.5e-114 415.2 235 91.9
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 3.5e-114 415.2 235 91.9
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 6.0e-114 414.5 235 91.5
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 6.0e-114 414.5 235 91.5
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 6.0e-114 414.5 235 91.5
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 2.3e-113 412.5 235 91.1
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 5.0e-108 394.8 235 87.7
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.9e-107 392.9 235 87.7
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.5e-106 388.7 235 86.8
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.3e-103 377.9 211 92.9
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.3e-103 377.9 211 92.9
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.3e-103 377.9 211 92.9
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 8.2e-103 377.5 201 95.0
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 3.8e-100 368.6 211 91.5
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 8.5e-100 367.5 198 94.4
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 5.5e-99 364.8 211 90.5
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.4e-97 360.1 259 75.7
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 1.8e-97 359.8 193 94.8
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 5.0e-92 341.7 201 89.6
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.5e-88 330.1 235 75.3
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.0e-88 329.7 237 76.4
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 4.4e-88 328.6 228 80.3
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.5e-85 318.5 160 98.1
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 3.3e-80 302.4 156 96.8
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 7.5e-80 301.2 166 94.6
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.1e-78 295.4 219 74.0
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-76 290.8 169 90.5
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.0e-76 290.8 169 90.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 8.5e-76 287.7 167 90.4
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 5.5e-75 285.0 173 88.4
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-73 280.8 167 88.6
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.8e-73 280.0 155 94.2
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 3.4e-72 275.8 235 65.1
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 9.8e-72 274.2 164 88.4
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.3e-71 273.9 235 66.8
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.7e-69 264.6 169 82.2
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 9.8e-64 247.7 157 84.7
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 2.2e-63 246.5 163 82.2
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.9e-63 245.4 146 88.4
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 3.0e-57 226.1 173 72.8
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 2.6e-56 223.0 233 52.4
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 4.1e-54 215.7 236 56.4
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 6.2e-50 201.8 104 91.3
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 6.2e-50 201.8 104 91.3
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 2.9e-47 193.0 100 95.0
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 1.6e-45 187.2 241 49.0
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.9e-43 180.3 101 87.1
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 9.5e-43 177.9 197 57.4
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-42 177.6 130 76.2
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 1.2e-42 177.6 128 76.6
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-41 172.9 159 63.5
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 1.3e-39 167.5 95 90.5
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 8.3e-39 164.9 91 91.2
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 4.1e-38 162.5 214 48.6
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.5e-37 159.5 102 77.5
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 7.3e-35 151.8 124 64.5
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 2.1e-34 150.2 235 43.8
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.6e-28 128.3 190 47.4
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 1.9e-27 127.1 64 95.3
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 9.9e-24 114.8 109 64.2
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.9e-23 113.2 92 71.7
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.8e-23 112.8 76 73.7
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 1.9e-22 110.5 51 100.0
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.5e-19 100.9 91 63.7
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.5e-19 100.1 58 87.9
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 5.6e-19 99.0 79 68.4
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 3.1e-17 93.2 67 73.1
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-16 90.1 79 65.8
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 8.4e-15 85.1 43 88.4
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-14 84.7 67 71.6
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 7.1e-14 82.0 41 95.1
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 2.1e-13 80.5 47 80.9
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 1.0e-12 78.2 111 48.6
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.1e-12 75.9 38 92.1
Nitab4.5_0005728g0070 Nicotiana tabacum HOM05D004537 ORTHO05D284914 1.9e-11 73.9 53 67.9
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 6.2e-10 68.9 34 94.1
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 1.2e-08 64.7 32 87.5
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-08 63.5 38 84.2
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 1.3e-07 61.2 83 39.8
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.7e-07 60.8 36 88.9


User provided reference genes

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