Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 3.2e-104 381.7 189 100.0
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 3.2e-104 381.7 189 100.0
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 2.3e-102 375.6 189 96.3
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 2.3e-102 375.6 189 96.3
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 2.3e-102 375.6 189 96.3
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 2.3e-102 375.6 189 96.3
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.3e-102 375.6 189 96.3
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 2.3e-102 375.6 189 96.3
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 9.7e-101 370.2 185 96.8
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 1.7e-100 369.4 185 96.2
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.8e-100 368.6 185 95.7
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.8e-100 368.6 185 95.7
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 6.3e-100 367.5 189 94.7
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 6.3e-100 367.5 189 94.7
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.3e-100 367.5 189 94.7
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.3e-100 367.5 189 94.7
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.3e-100 367.5 189 94.7
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 6.3e-100 367.5 189 94.7
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 6.3e-100 367.5 189 95.2
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.6e-98 362.8 186 94.6
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.0e-98 362.5 185 94.1
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 7.7e-98 360.5 188 94.1
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.0e-97 360.1 189 94.2
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.3e-97 359.8 189 94.2
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.3e-97 359.8 189 94.2
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.3e-97 359.8 189 94.2
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.3e-97 359.8 189 94.2
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.3e-97 359.8 189 94.2
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 5.0e-97 357.8 188 93.1
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-96 355.5 189 93.1
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-96 355.5 189 93.1
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-96 355.5 189 93.1
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-96 355.5 189 93.1
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.2e-96 355.1 185 93.5
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 7.2e-96 354.0 189 91.5
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 1.6e-95 352.8 189 92.1
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.7e-95 352.1 188 92.6
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 3.0e-94 348.6 189 92.1
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 3.0e-94 348.6 189 92.1
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 4.0e-94 348.2 189 91.5
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 4.0e-94 348.2 188 92.0
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 6.7e-94 347.4 189 91.0
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 6.7e-94 347.4 189 91.5
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 8.8e-94 347.1 189 91.5
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 1.5e-93 346.3 189 91.5
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.0e-93 345.9 188 91.0
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 3.3e-93 345.1 188 90.4
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.4e-93 344.7 186 89.2
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 6.1e-87 324.3 175 90.3
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 6.1e-87 324.3 176 90.3
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-83 313.2 189 82.5
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 4.5e-82 308.1 189 84.7
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.0e-78 295.4 180 82.2
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.0e-78 295.4 180 82.2
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 2.6e-77 292.4 172 84.9
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 3.4e-77 292.0 189 79.9
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.8e-76 288.9 188 78.7
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.8e-75 286.2 185 79.5
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.7e-73 279.6 188 77.7
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 3.8e-73 278.5 182 80.2
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 9.5e-72 273.9 189 76.2
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 9.5e-72 273.9 189 77.2
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.2e-71 273.5 158 83.5
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.4e-70 270.0 189 75.7
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 9.2e-67 257.3 149 83.9
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.0e-66 254.6 189 72.0
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 1.9e-59 233.0 183 69.9
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 3.0e-57 225.7 169 68.6
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.6e-57 224.2 167 70.1
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.8e-54 214.5 175 67.4
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.6e-53 212.6 169 69.8
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.7e-52 209.9 105 93.3
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.2e-52 209.5 164 70.7
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 8.3e-52 207.6 151 70.9
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 2.4e-51 206.1 121 79.3
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 5.4e-51 204.9 165 67.9
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 1.1e-46 190.7 183 60.7
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.0e-45 186.4 149 63.8
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 1.7e-44 183.3 95 91.6
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 8.4e-44 181.0 91 92.3
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.9e-43 179.9 109 80.7
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 3.2e-43 179.1 94 90.4
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 1.2e-42 177.2 99 89.9
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 4.6e-42 175.3 108 78.7
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 2.8e-39 166.0 82 100.0
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 1.1e-38 164.1 81 100.0
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 3.4e-37 159.1 85 88.2
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 4.6e-34 148.7 89 79.8
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.7e-33 146.7 109 71.6
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.1e-31 139.8 88 75.0
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.4e-29 132.5 72 94.4
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 6.0e-26 121.7 97 60.8
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 3.9e-25 119.0 188 36.2
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.1e-24 117.5 100 66.0
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.4e-22 110.5 117 58.1
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 5.3e-22 108.6 70 78.6
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 2.6e-21 106.3 73 69.9
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 4.6e-18 95.5 53 81.1
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.1e-14 84.3 68 72.1
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-12 77.4 40 95.0
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 2.9e-12 76.3 102 46.1
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.5e-11 73.2 50 78.0
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 5.5e-11 72.0 65 63.1
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 2.1e-10 70.1 56 64.3
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.9e-10 68.2 61 60.7
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 1.3e-09 67.4 36 97.2
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 7.4e-08 61.6 46 69.6
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 2.8e-07 59.7 31 100.0


User provided reference genes

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