Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 1.9e-139 499.2 255 100.0
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 3.8e-132 474.9 254 95.3
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 5.6e-128 461.1 250 94.8
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 9.6e-128 460.3 250 94.0
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 6.9e-126 454.1 245 94.7
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 7.6e-125 450.7 252 92.5
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 7.6e-125 450.7 241 95.4
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 4.9e-124 448.0 250 92.4
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 6.5e-124 447.6 250 92.4
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 3.7e-119 431.8 246 90.2
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 6.7e-113 411.0 239 90.0
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 5.7e-112 407.9 239 89.5
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 9.7e-112 407.1 239 89.1
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 4.5e-109 398.3 246 85.0
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 4.5e-109 398.3 241 85.9
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.9e-107 392.9 215 94.0
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.5
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.5
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.5
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.1
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.1
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.1
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.1
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.1
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.5
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 4.7e-106 388.3 239 84.5
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 2.3e-105 386.0 240 84.2
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 2.0e-104 382.9 240 83.3
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 4.5e-93 345.1 230 79.6
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 4.5e-93 345.1 230 79.6
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 7.7e-93 344.4 230 79.6
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 5.0e-92 341.7 175 100.0
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 5.0e-92 341.7 247 75.3
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 6.5e-92 341.3 247 74.9
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 3.2e-91 339.0 239 77.4
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 1.6e-90 336.7 239 76.6
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 6.1e-90 334.7 245 74.7
SHI50293 Sapria himalayana HOM05D006604 ORTHO05D007974 5.2e-89 331.6 199 84.9
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.4e-86 323.6 240 75.4
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 1.8e-86 323.2 239 73.2
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 3.1e-86 322.4 239 73.2
SEGI_30085 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 5.3e-86 321.6 231 75.3
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 4.5e-85 318.5 182 90.7
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 1.5e-83 313.5 215 80.0
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 1.0e-81 307.4 226 73.9
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 6.8e-81 304.7 250 69.2
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 4.2e-75 285.4 240 67.1
LjContig00439g0024190 Lotus japonicus HOM05D006604 ORTHO05D007974 2.1e-74 283.1 155 93.5
BolSC28t60307H Brassica oleracea HOM05D006604 ORTHO05D007974 7.8e-69 264.6 166 84.3
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 9.8e-56 221.1 248 54.4
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 3.9e-52 209.1 166 70.5
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 6.8e-49 198.4 133 79.7
SHI50562 Sapria himalayana HOM05D006604 ORTHO05D007974 6.8e-49 198.4 141 76.6
SHI36367 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-48 197.6 139 77.7
SHI36697 Sapria himalayana HOM05D006604 ORTHO05D007974 4.4e-48 195.7 141 75.9
SHI37564 Sapria himalayana HOM05D006604 ORTHO05D007974 3.9e-44 182.6 141 73.8
SHI35295 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-42 177.6 92 94.6
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.8e-42 176.4 157 65.0
Potri.014G168000 Populus trichocarpa HOM05D006604 ORTHO05D007974 1.4e-41 174.1 104 85.6
SMO053G0007 Selaginella moellendorffii HOM05D006604 ORTHO05D007974 1.4e-41 174.1 231 48.9
SHI35759 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-41 173.7 91 93.4
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 5.2e-41 172.2 103 85.4
Nitab4.5_0002404g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.5e-40 170.6 120 77.5
GSVIVG01023423001 Vitis vinifera HOM05D006604 ORTHO05D007974 5.8e-40 168.7 89 94.4
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 7.6e-40 168.3 91 92.3
SHI28635 Sapria himalayana HOM05D006604 ORTHO05D007974 9.9e-40 167.9 154 66.9
SHI35478 Sapria himalayana HOM05D006604 ORTHO05D007974 2.2e-39 166.8 91 92.3
SHI53009 Sapria himalayana HOM05D006604 ORTHO05D007974 2.4e-38 163.3 128 73.4
RcHm_v2.0_Chr7g0231141 Rosa chinensis HOM05D006604 ORTHO05D007974 9.3e-38 161.4 85 95.3
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 2.1e-37 160.2 111 75.7
Peaxi162Scf00000g01811 Petunia axillaris HOM05D006604 ORTHO05D007974 1.1e-35 154.5 194 53.1
ClCG06G009210 Citrullus lanatus HOM05D006604 ORTHO05D007974 2.8e-34 149.8 157 58.0
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 2.4e-33 146.7 79 92.4
arahy.Tifrunner.gnm1.ann1.NC5V37 Arachis hypogaea HOM05D006604 ORTHO05D007974 3.1e-33 146.4 94 77.7
SHI33922 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-32 144.4 151 57.6
LjContig00439g0025482 Lotus japonicus HOM05D006604 ORTHO05D007974 2.9e-31 139.8 78 88.5
BolC1t03444H Brassica oleracea HOM05D006604 ORTHO05D007974 6.4e-31 138.7 84 79.8
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 1.2e-29 134.4 120 64.2
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 1.2e-29 134.4 120 64.2
SHI51349 Sapria himalayana HOM05D006604 ORTHO05D007974 2.7e-29 133.3 72 87.5
CARHR288250 Cardamine hirsuta HOM05D006604 ORTHO05D007974 4.6e-29 132.5 91 78.0
SHI54304 Sapria himalayana HOM05D006604 ORTHO05D007974 4.6e-29 132.5 72 91.7
Glyma.16G133700 Glycine max HOM05D006604 ORTHO05D007974 1.3e-28 131.0 73 87.7
MELO3C034885.2 Cucumis melo HOM05D006604 ORTHO05D007974 1.3e-26 124.4 141 52.5
Nn7g37740 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.8e-26 123.2 67 92.5
MD15G1429600 Malus domestica HOM05D006604 ORTHO05D007974 6.2e-26 122.1 81 79.0
MELO3C027032.2 Cucumis melo HOM05D006604 ORTHO05D007974 1.4e-25 120.9 70 87.1
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 1.2e-24 117.9 72 81.9
ATR0392G001 Amborella trichopoda HOM05D006604 ORTHO05D007974 2.2e-23 113.6 100 62.0
Nn6g31985 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.9e-23 113.2 63 90.5
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 4.9e-23 112.5 141 48.9
GSVIVG01035307001 Vitis vinifera HOM05D000029 ORTHO05D001072 2.4e-22 110.2 106 61.3
Glyma.01G103450 Glycine max HOM05D006604 ORTHO05D007974 1.6e-21 107.5 74 78.4
MELO3C027524.2 Cucumis melo HOM05D006604 ORTHO05D007974 4.6e-21 105.9 62 85.5
Nn2g15525 Nelumbo nucifera HOM05D006604 ORTHO05D007974 4.6e-21 105.9 57 93.0
SHI01304 Sapria himalayana HOM05D006604 ORTHO05D007974 3.0e-20 103.2 87 66.7
MELO3C029409.2 Cucumis melo HOM05D006604 ORTHO05D007974 1.5e-19 100.9 61 85.2
C01p34770 Brassica napus HOM05D013555 ORTHO05D016062 1.9e-19 100.5 59 78.0
SHI35935 Sapria himalayana HOM05D006604 ORTHO05D007974 1.9e-19 100.5 60 80.0
C01p34870 Brassica napus HOM05D013555 ORTHO05D016062 4.3e-19 99.4 58 79.3
Mapoly1449s0001 Marchantia polymorpha HOM05D006604 ORTHO05D007974 5.6e-19 99.0 189 31.2
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 3.1e-17 93.2 256 32.8
SHI55017 Sapria himalayana HOM05D006604 ORTHO05D007974 2.6e-16 90.1 53 83.0
SHI27524 Sapria himalayana HOM05D006604 ORTHO05D007974 1.0e-15 88.2 69 66.7
SHI01303 Sapria himalayana HOM05D006604 ORTHO05D007974 7.1e-14 82.0 57 75.4
SHI37140 Sapria himalayana HOM05D006604 ORTHO05D007974 9.3e-14 81.6 44 86.4
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 6.0e-13 79.0 45 88.9
SHI36463 Sapria himalayana HOM05D006604 ORTHO05D007974 7.9e-13 78.6 43 86.0
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 2.3e-12 77.0 58 74.1
SHI12109 Sapria himalayana HOM05D006604 ORTHO05D007974 5.1e-12 75.9 46 80.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 8.7e-12 75.1 46 80.4
Cre01.g018800 Chlamydomonas reinhardtii HOM05D006604 ORTHO05D007974 1.9e-11 73.9 175 32.6
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.9e-11 73.9 107 45.8
Eucgr.D01303 Eucalyptus grandis HOM05D006604 ORTHO05D007974 3.3e-11 73.2 82 46.3
Medtr8g077470 Medicago truncatula HOM05D006604 ORTHO05D007974 5.7e-11 72.4 50 70.0
Nitab4.5_0002418g0090 Nicotiana tabacum HOM05D006604 ORTHO05D007974 5.7e-11 72.4 44 81.8
SHI31173 Sapria himalayana HOM05D006604 ORTHO05D007974 4.1e-09 66.2 167 34.1
SHI36366 Sapria himalayana HOM05D006604 ORTHO05D007974 4.1e-09 66.2 32 100.0
ClCG07G016010 Citrullus lanatus HOM05D006604 ORTHO05D007974 2.6e-08 63.5 45 71.1
SHI12053 Sapria himalayana HOM05D006604 ORTHO05D007974 3.4e-08 63.2 42 78.6
ClCG06G014670 Citrullus lanatus HOM05D006604 ORTHO05D007974 7.6e-08 62.0 36 86.1
ECA039G0009 Erigeron canadensis HOM05D008105 ORTHO05D010309 7.6e-08 62.0 38 84.2
Medtr0248s0030 Medicago truncatula HOM05D006604 ORTHO05D007974 1.3e-07 61.2 34 91.2
SHI36696 Sapria himalayana HOM05D006604 ORTHO05D007974 5.0e-07 59.3 28 100.0
SHI37563 Sapria himalayana HOM05D006604 ORTHO05D007974 5.0e-07 59.3 30 93.3
SHI50563 Sapria himalayana HOM05D006604 ORTHO05D007974 5.0e-07 59.3 28 100.0
ECA003G0002 Erigeron canadensis HOM05D006604 ORTHO05D007974 8.4e-07 58.5 36 83.3
MELO3C000965.2 Cucumis melo HOM05D006604 ORTHO05D007974 7.2e-06 55.5 33 84.8


User provided reference genes

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