Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 1.7e-210 735.7 370 100.0
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 5.3e-127 458.4 315 78.7
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 1.7e-117 426.8 334 73.1
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 1.7e-117 426.8 334 73.1
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 6.8e-82 308.5 274 63.5
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 8.3e-80 301.6 236 71.6
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 8.3e-80 301.6 236 71.6
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 3.1e-74 283.1 150 96.7
Nitab4.5_0001788g0230 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.1e-70 270.4 244 64.8
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 4.6e-70 269.2 153 90.2
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 2.3e-69 266.9 147 93.2
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 2.3e-69 266.9 147 93.2
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 3.0e-69 266.5 141 96.5
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.1e-69 265.8 142 96.5
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 6.6e-69 265.4 147 93.2
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 3.1e-66 256.5 133 97.7
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 3.1e-66 256.5 133 97.7
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 3.1e-66 256.5 151 89.4
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 4.0e-66 256.1 145 91.7
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 5.2e-66 255.8 137 95.6
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 5.2e-66 255.8 135 96.3
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 5.2e-66 255.8 135 96.3
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 5.2e-66 255.8 137 95.6
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.5e-65 254.2 141 92.9
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.5e-65 254.2 141 92.9
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 1.5e-65 254.2 141 92.9
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 6.4e-64 248.8 133 96.2
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.4e-63 247.7 133 94.7
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 1.9e-63 247.3 133 95.5
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 2.1e-62 243.8 133 94.7
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 2.1e-62 243.8 140 89.3
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 1.7e-61 240.7 133 93.2
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.7e-61 240.7 137 91.2
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 3.9e-61 239.6 137 91.2
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 1.9e-60 237.3 137 89.8
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.9e-60 237.3 139 89.2
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 4.3e-60 236.1 131 92.4
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 1.1e-58 231.5 137 88.3
Psat4g185400 Pisum sativum HOM05D003666 ORTHO05D004770 4.0e-58 229.6 133 87.2
SEGI_24024 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 2.6e-57 226.9 141 82.3
SEGI_34311 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 2.6e-57 226.9 141 82.3
TPR.G18511 Trifolium pratense HOM05D003666 ORTHO05D004770 7.6e-57 225.3 243 57.2
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.4e-55 220.3 192 64.6
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 2.3e-53 213.8 127 88.2
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 1.3e-48 198.0 103 98.1
Thhalv10015949m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 2.2e-48 197.2 122 85.2
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.9e-48 196.8 122 82.8
arahy.Tifrunner.gnm1.ann1.A5I0RB Arachis hypogaea HOM05D003666 ORTHO05D004770 8.4e-48 195.3 224 54.5
Gohir.A12G076865 Gossypium hirsutum HOM05D003666 ORTHO05D004770 6.0e-46 189.1 109 89.9
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 3.0e-45 186.8 111 88.3
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 2.4e-42 177.2 95 96.8
Peaxi162Scf00530g00005 Petunia axillaris HOM05D003666 ORTHO05D004770 1.9e-39 167.5 197 52.8
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 2.8e-35 153.7 106 82.1
MELO3C030345.2 Cucumis melo HOM05D003666 ORTHO05D004770 4.0e-34 149.8 155 60.0
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 5.3e-34 149.4 82 90.2
Nitab4.5_0000593g0220 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.8e-33 146.0 105 75.2
CAN.G85.17 Capsicum annuum HOM05D003666 ORTHO05D004770 2.2e-32 144.1 82 90.2
CDE02G4352 Ceratophyllum demersum HOM05D011521 ORTHO05D043913 4.9e-32 142.9 85 85.9
CAN.G1001.36 Capsicum annuum HOM05D003666 ORTHO05D004770 2.5e-31 140.6 82 87.8
SHI21047 Sapria himalayana HOM05D003666 ORTHO05D004770 2.1e-30 137.5 93 78.5
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 6.7e-29 132.5 73 91.8
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 3.7e-27 126.7 136 48.5
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 6.3e-27 125.9 139 56.8
Peaxi162Scf00147g00311 Petunia axillaris HOM05D003666 ORTHO05D004770 7.6e-25 119.0 69 88.4
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 3.2e-23 113.6 114 58.8
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 7.4e-20 102.4 141 48.2
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 4.1e-18 96.7 138 39.1
Lalb_Chr00c54g0413571 Lupinus albus HOM05D003666 ORTHO05D004770 6.9e-18 95.9 48 97.9
Sopen02g001520 Solanum pennellii HOM05D000002 ORTHO05D000001 4.6e-14 83.2 45 82.2
Solyc10g062000.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 6.1e-14 82.8 51 78.4
SEGI_03857 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.8e-13 81.3 58 74.1
TPR.G40510 Trifolium pratense HOM05D003666 ORTHO05D004770 1.8e-13 81.3 42 90.5
Oeu022812.1 Olea europaea HOM05D003666 ORTHO05D004770 6.7e-13 79.3 71 67.6
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 6.7e-13 79.3 40 90.0
arahy.Tifrunner.gnm1.ann1.4X04Y3 Arachis hypogaea HOM05D003666 ORTHO05D004770 4.3e-12 76.6 40 90.0
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 9.7e-12 75.5 109 38.5
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 5.9e-09 66.2 147 32.0
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 5.9e-09 66.2 147 32.0
Ciclev10027631m.g Citrus clementina HOM05D001200 ORTHO05D002731 7.7e-09 65.9 186 27.4
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 1.3e-08 65.1 147 31.3
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 1.3e-08 65.1 147 30.6
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 2.2e-08 64.3 147 30.6
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 2.2e-08 64.3 147 30.6
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 2.2e-08 64.3 147 30.6
Phvul.002G050301 Phaseolus vulgaris HOM05D001200 ORTHO05D002731 2.2e-08 64.3 146 30.8
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.9e-08 63.9 150 30.0
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.9e-08 63.9 150 30.0
Ciclev10027650m.g Citrus clementina HOM05D001200 ORTHO05D002731 5.0e-08 63.2 167 26.9
Ciclev10013974m.g Citrus clementina HOM05D001200 ORTHO05D002731 6.5e-08 62.8 148 27.7
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 6.5e-08 62.8 117 33.3
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 6.5e-08 62.8 150 29.3
Gohir.A02G134201 Gossypium hirsutum HOM05D001200 ORTHO05D010401 6.5e-08 62.8 150 29.3
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 6.5e-08 62.8 167 31.7
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-07 61.6 153 31.4
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-07 61.6 153 31.4
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-07 61.6 153 31.4
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-07 61.6 153 31.4
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-07 61.6 153 31.4
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-07 61.6 153 31.4
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 1.4e-07 61.6 153 31.4
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 1.9e-07 61.2 148 29.1
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 2.5e-07 60.8 166 28.9
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 3.2e-07 60.5 166 28.3
SHI01159 Sapria himalayana HOM05D003666 ORTHO05D004770 5.5e-07 59.7 55 58.2
HanXRQChr03g0073091 Helianthus annuus HOM05D001200 ORTHO05D002731 7.2e-07 59.3 117 32.5
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 7.2e-07 59.3 72 44.4
BcaC03g16699 Brassica carinata HOM05D001200 ORTHO05D002731 9.4e-07 58.9 163 27.6
C09p24620 Brassica napus HOM05D001200 ORTHO05D002731 9.4e-07 58.9 163 27.6
BolSC29t60504H Brassica oleracea HOM05D001200 ORTHO05D002731 9.4e-07 58.9 163 27.6
BolSC35t60702H Brassica oleracea HOM05D001200 ORTHO05D002731 9.4e-07 58.9 163 27.6
BolSC37t60791H Brassica oleracea HOM05D001200 ORTHO05D002731 9.4e-07 58.9 163 27.6
BraSC179t45776Z Brassica rapa HOM05D001200 ORTHO05D002731 9.4e-07 58.9 163 27.6
BraSC59t46549Z Brassica rapa HOM05D001200 ORTHO05D002731 9.4e-07 58.9 163 27.6
CARHR282420 Cardamine hirsuta HOM05D001200 ORTHO05D002731 9.4e-07 58.9 147 29.3
C09p40370 Brassica napus HOM05D001200 ORTHO05D002731 1.6e-06 58.2 168 27.4
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.6e-06 58.2 117 29.9
Sed0012006 Sechium edule HOM05D001200 ORTHO05D002731 1.6e-06 58.2 144 27.8
Solyc10g045765.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.6e-06 58.2 35 74.3
arahy.Tifrunner.gnm1.ann1.2QK9Z7 Arachis hypogaea HOM05D001200 ORTHO05D002731 2.1e-06 57.8 114 29.8
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 4.7e-06 56.6 150 29.3


User provided reference genes

Program Settings