Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.2e-261 906.0 449 100.0
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 4.8e-231 804.3 452 89.2
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.1e-227 793.1 452 90.7
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 9.3e-227 790.0 456 88.4
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 3.6e-226 788.1 456 88.6
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 3.6e-226 788.1 456 88.6
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 3.9e-225 784.6 456 88.2
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 8.8e-225 783.5 420 93.8
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.4e-221 771.5 445 88.1
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 3.4e-221 771.5 446 89.2
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 4.2e-219 764.6 461 85.0
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.4e-214 749.6 486 80.9
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 8.5e-212 740.3 442 85.3
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.4e-208 728.0 497 76.9
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.2e-205 719.9 601 65.7
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 8.5e-204 713.8 655 62.0
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.0e-201 704.9 540 70.0
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.1e-198 695.3 453 80.6
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 3.0e-193 678.7 542 68.3
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.8e-193 677.6 603 62.5
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 4.1e-190 668.3 454 77.8
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 5.4e-190 667.9 577 65.0
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 9.8e-184 647.1 382 87.4
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.9e-181 637.9 363 88.7
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-173 612.8 449 73.1
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 8.6e-172 607.4 454 72.7
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 9.5e-171 604.0 487 67.8
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 6.2e-170 601.3 555 60.5
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 4.1e-166 588.6 461 68.8
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-163 580.5 461 68.3
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 4.9e-159 565.1 442 70.1
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 2.1e-149 533.1 452 66.2
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.9e-142 510.0 614 51.5
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 5.8e-136 488.4 382 69.9
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.1e-126 457.6 501 54.5
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 6.2e-122 441.8 257 89.5
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.5e-120 437.2 265 86.0
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 5.8e-120 435.3 242 88.0
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.8e-116 423.7 244 90.6
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 6.7e-116 421.8 216 93.1
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 6.7e-116 421.8 216 93.1
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.5e-115 420.6 257 86.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.9e-115 420.2 261 86.6
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.9e-115 420.2 261 86.6
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.9e-115 420.2 261 86.6
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 5.7e-115 418.7 261 86.2
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 7.4e-115 418.3 261 84.7
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.8e-113 413.7 257 85.2
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.0e-108 397.9 244 85.7
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 3.0e-108 396.4 248 85.9
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 9.7e-107 391.3 257 80.9
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 2.2e-106 390.2 257 82.1
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 2.2e-106 390.2 257 82.1
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 2.2e-106 390.2 257 82.1
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 2.2e-106 390.2 257 82.1
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 2.2e-106 390.2 257 82.1
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 2.2e-106 390.2 257 82.1
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 6.3e-106 388.7 198 94.9
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 6.3e-106 388.7 578 46.0
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 8.2e-106 388.3 240 86.7
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 3.1e-105 386.3 244 84.0
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 5.3e-105 385.6 261 80.5
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 5.3e-105 385.6 261 80.5
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 5.3e-105 385.6 237 85.7
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 6.9e-105 385.2 242 85.1
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.7e-103 380.6 199 92.5
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 3.2e-102 376.3 199 92.0
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 7.2e-102 375.2 236 84.7
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 4.7e-101 372.5 198 89.4
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 2.0e-99 367.1 198 88.9
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 2.2e-98 363.6 189 92.6
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 2.2e-98 363.6 189 92.6
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 2.2e-98 363.6 189 92.6
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 1.4e-97 360.9 245 79.6
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.4e-97 360.1 189 91.0
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 2.4e-97 360.1 189 91.0
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.4e-97 360.1 189 91.0
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 2.4e-97 360.1 257 78.6
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 7.7e-96 355.1 198 87.4
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.3e-95 354.4 248 78.2
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 1.9e-94 350.5 265 72.8
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.2e-93 347.8 240 79.2
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.2e-93 347.8 240 79.2
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 5.2e-92 342.4 236 79.2
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-88 330.9 175 91.4
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.6e-88 330.1 199 83.4
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 1.7e-87 327.4 254 70.9
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 2.2e-87 327.0 195 83.1
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 2.2e-87 327.0 195 83.1
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 6.5e-87 325.5 199 81.9
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 4.0e-84 316.2 169 89.9
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 2.2e-82 310.5 164 90.2
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 3.7e-82 309.7 185 88.6
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.8e-81 307.4 190 86.3
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.7e-80 303.5 202 82.7
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 5.5e-78 295.8 194 83.5
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 3.7e-74 283.1 148 89.9
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 3.7e-74 283.1 148 89.9
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 1.1e-73 281.6 165 83.6
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-72 277.3 188 74.5
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 6.1e-69 265.8 248 65.3
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.4e-68 264.6 150 85.3
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 3.7e-66 256.5 124 94.4
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 4.9e-66 256.1 232 62.9
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 2.7e-64 250.4 140 88.6
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.0e-63 248.4 155 84.5
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.2e-61 241.5 203 69.0
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 3.2e-57 226.9 202 63.4
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 3.2e-57 226.9 202 63.4
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 5.4e-57 226.1 173 74.0
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 2.7e-56 223.8 146 76.7
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 4.6e-56 223.0 111 94.6
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.3e-55 221.5 109 89.9
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-54 218.4 241 55.2
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 2.9e-50 203.8 113 84.1
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.5e-48 196.8 181 57.5
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 9.5e-46 188.7 119 85.7
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 2.1e-45 187.6 107 87.9
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 4.0e-44 183.3 121 81.8
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 4.0e-44 183.3 113 85.8
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 4.4e-43 179.9 176 58.0
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.9e-42 176.4 116 79.3
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-38 165.2 113 80.5
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 6.8e-36 156.0 93 82.8
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-35 155.2 145 61.4
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 6.4e-34 149.4 92 81.5
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.4e-33 147.5 95 78.9
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.2e-33 146.7 159 57.9
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 6.0e-32 142.9 76 90.8
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 6.0e-32 142.9 76 90.8
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 6.0e-32 142.9 76 90.8
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 3.0e-31 140.6 131 57.3
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.0e-31 140.6 84 83.3
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.3e-30 136.7 84 81.0
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.8e-29 134.0 79 83.5
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 3.1e-28 130.6 92 71.7
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 6.4e-26 122.9 113 61.9
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-25 122.1 189 41.3
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 1.4e-25 121.7 65 90.8
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 4.2e-25 120.2 71 84.5
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 6.6e-23 112.8 59 93.2
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.1e-22 112.1 109 55.0
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 1.8e-20 104.8 66 71.2
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 2.6e-19 100.9 59 84.7
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.7e-18 98.2 54 81.5
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 3.8e-18 97.1 170 40.6
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 7.1e-17 92.8 50 90.0
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 9.3e-17 92.4 48 91.7
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-16 91.3 172 36.6
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 6.7e-15 86.3 51 72.5
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 4.3e-14 83.6 46 82.6
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 7.4e-14 82.8 64 64.1
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 9.6e-14 82.4 68 61.8
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-12 78.2 78 56.4
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 2.4e-12 77.8 53 64.2
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 6.9e-12 76.3 55 72.7
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 9.0e-12 75.9 67 59.7
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 2.6e-11 74.3 48 81.2
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 7.6e-11 72.8 47 74.5
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-10 72.4 109 48.6
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-10 72.0 40 87.5
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 1.3e-10 72.0 36 94.4
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 3.8e-10 70.5 59 64.4
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 1.1e-09 68.9 167 35.3
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 7.9e-08 62.8 47 63.8
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 1.5e-06 58.5 69 63.8
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.5e-06 57.8 33 84.8


User provided reference genes

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