Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 6.8e-42 173.7 96 100.0
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 2.9e-32 141.7 85 92.9
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 1.4e-31 139.4 85 91.8
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 1.4e-31 139.4 85 91.8
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 1.4e-31 139.4 85 91.8
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 1.4e-31 139.4 85 91.8
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 1.4e-31 139.4 86 90.7
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.9e-31 139.0 85 91.8
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 1.9e-31 139.0 85 91.8
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 9.2e-31 136.7 86 89.5
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 1.6e-30 136.0 85 90.6
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 6.0e-30 134.0 85 89.4
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 1.0e-29 133.3 81 91.4
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 1.0e-29 133.3 81 91.4
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 1.7e-29 132.5 85 88.2
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 2.3e-29 132.1 87 86.2
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 2.3e-29 132.1 85 89.4
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 5.0e-29 131.0 75 96.0
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 6.6e-29 130.6 83 88.0
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 8.6e-29 130.2 74 98.6
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 8.6e-29 130.2 85 89.4
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 8.6e-29 130.2 85 89.4
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 1.1e-28 129.8 74 97.3
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 1.5e-28 129.4 75 96.0
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 2.5e-28 128.6 86 84.9
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 3.3e-28 128.3 75 96.0
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 1.6e-27 125.9 77 93.5
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 1.6e-27 125.9 75 94.7
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 4.7e-27 124.4 75 93.3
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 6.2e-27 124.0 74 93.2
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 8.0e-27 123.6 75 93.3
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 1.8e-26 122.5 74 93.2
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 1.8e-26 122.5 74 93.2
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.8e-26 122.5 75 93.3
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 1.8e-26 122.5 74 93.2
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 2.3e-26 122.1 75 92.0
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 4.0e-26 121.3 74 93.2
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 4.0e-26 121.3 74 93.2
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 4.0e-26 121.3 74 93.2
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 5.2e-26 120.9 74 93.2
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 5.2e-26 120.9 75 90.7
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 1.2e-25 119.8 72 94.4
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.4e-25 118.2 75 88.0
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 4.4e-25 117.9 84 82.1
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.4e-25 117.9 75 88.0
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 4.4e-25 117.9 71 93.0
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 7.5e-25 117.1 72 93.1
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 7.5e-25 117.1 74 89.2
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 9.8e-25 116.7 78 87.2
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 1.3e-24 116.3 75 86.7
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 2.2e-24 115.5 74 89.2
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-23 113.2 77 84.4
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-23 113.2 77 84.4
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-23 112.8 74 85.1
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 1.4e-23 112.8 87 79.3
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 1.4e-23 112.8 86 77.9
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 1.9e-23 112.5 74 86.5
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 7.1e-23 110.5 67 92.5
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 7.1e-23 110.5 74 83.8
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 7.1e-23 110.5 75 85.3
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 7.1e-23 110.5 68 91.2
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-22 109.8 87 75.9
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-22 109.4 83 80.7
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-22 109.4 87 78.2
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 2.1e-22 109.0 74 83.8
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-22 109.0 87 77.0
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-22 108.2 87 77.0
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-22 108.2 87 77.0
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 4.6e-22 107.8 69 89.9
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 4.6e-22 107.8 87 75.9
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 6.0e-22 107.5 87 77.0
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 1.0e-21 106.7 85 72.9
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-21 106.7 74 81.1
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 1.7e-21 105.9 74 81.1
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 2.3e-21 105.5 72 81.9
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 2.3e-21 105.5 87 74.7
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 3.9e-21 104.8 73 83.6
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 5.1e-21 104.4 89 73.0
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 5.1e-21 104.4 71 81.7
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 5.1e-21 104.4 87 74.7
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 6.6e-21 104.0 74 85.1
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-20 103.2 90 73.3
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.9e-20 102.4 71 80.3
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 1.9e-20 102.4 74 78.4
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 2.5e-20 102.1 87 73.6
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 2.5e-20 102.1 87 73.6
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 3.3e-20 101.7 87 73.6
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 3.3e-20 101.7 74 81.1
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 3.3e-20 101.7 60 93.3
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.6e-19 99.4 61 88.5
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-19 99.4 87 73.6
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-19 99.4 65 84.6
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 2.1e-19 99.0 68 82.4
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-19 99.0 87 71.3
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.8e-19 98.6 74 74.3
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-18 96.7 65 83.1
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 1.4e-18 96.3 75 78.7
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 1.8e-18 95.9 62 87.1
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 1.8e-18 95.9 75 77.3
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 2.3e-18 95.5 74 78.4
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 2.3e-18 95.5 65 81.5
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 3.1e-18 95.1 119 56.3
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 5.2e-18 94.4 75 76.0
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 5.2e-18 94.4 75 76.0
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 6.8e-18 94.0 61 85.2
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 8.9e-18 93.6 62 85.5
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-17 92.8 62 85.5
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 2.6e-17 92.0 63 84.1
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 3.4e-17 91.7 64 79.7
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 7.6e-17 90.5 65 80.0
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 9.9e-17 90.1 57 86.0
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.2e-16 89.0 59 83.1
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 2.9e-16 88.6 61 83.6
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 1.9e-15 85.9 61 78.7
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 3.2e-15 85.1 53 88.7
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 3.2e-15 85.1 53 88.7
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 2.1e-14 82.4 81 63.0
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 4.6e-14 81.3 69 71.0
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 6.0e-14 80.9 76 60.5
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 6.0e-14 80.9 76 60.5
HanXRQChr08g0236091 Helianthus annuus HOM05D006320 ORTHO05D007069 2.3e-13 79.0 76 65.8
HanXRQMTg0579331 Helianthus annuus HOM05D006320 ORTHO05D007069 2.3e-13 79.0 76 65.8
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 2.3e-13 79.0 67 71.6
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 2.3e-13 79.0 67 71.6
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 5.1e-13 77.8 72 58.3
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 5.1e-13 77.8 72 58.3
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 5.1e-13 77.8 74 63.5
HanXRQChr16g0504511 Helianthus annuus HOM05D006320 ORTHO05D007069 8.6e-13 77.0 75 65.3
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 8.6e-13 77.0 79 60.8
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.1e-12 76.6 75 64.0
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 1.9e-12 75.9 75 64.0
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 1.9e-12 75.9 72 62.5
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 2.5e-12 75.5 46 91.3
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 2.5e-12 75.5 64 71.9
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 3.3e-12 75.1 49 83.7
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 5.6e-12 74.3 67 67.2
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 7.3e-12 73.9 47 89.4
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 1.6e-11 72.8 49 79.6
EL10Ac6g14143 Beta vulgaris HOM05D010007 ORTHO05D007069 2.8e-11 72.0 42 92.9
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 2.8e-11 72.0 80 60.0
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.8e-10 69.3 49 75.5
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 2.4e-10 68.9 54 74.1
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.0e-10 68.2 64 67.2
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 2.6e-09 65.5 40 87.5
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 4.4e-09 64.7 63 63.5
Mapoly3785s0001 Marchantia polymorpha HOM05D006320 ORTHO05D007069 1.3e-08 63.2 71 54.9
TAR424G0002 Trochodendron aralioides HOM05D006320 ORTHO05D007069 2.2e-08 62.4 58 62.1
Haze_27774 Corylus avellana HOM05D006320 ORTHO05D007069 2.9e-08 62.0 71 46.5
Haze_27775 Corylus avellana HOM05D006320 ORTHO05D007069 2.9e-08 62.0 71 46.5
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 2.9e-08 62.0 40 82.5
Peaxi162Scf00446g00053 Petunia axillaris HOM05D006320 ORTHO05D007069 1.1e-07 60.1 33 93.9
Nitab4.5_0010033g0150 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.9e-07 59.3 42 78.6
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 7.1e-07 57.4 41 80.5
ClCG08G001280 Citrullus lanatus HOM05D006320 ORTHO05D007069 1.2e-06 56.6 38 81.6
Nitab4.5_0005853g0090 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.1e-06 55.8 43 69.8
SHI31532 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-06 55.8 45 68.9
SHI50382 Sapria himalayana HOM05D006320 ORTHO05D007069 2.1e-06 55.8 50 70.0
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 2.7e-06 55.5 34 88.2
Dinv06726 Davidia involucrata HOM05D006320 ORTHO05D007069 4.6e-06 54.7 32 90.6
SHI15041 Sapria himalayana HOM05D006320 ORTHO05D007069 7.8e-06 53.9 44 70.5


User provided reference genes

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