Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 5.1e-131 471.1 237 100.0
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 1.0e-86 323.9 233 75.5
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.3e-83 312.8 233 73.0
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 3.9e-83 312.0 233 73.0
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.8e-81 305.8 233 71.2
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 3.7e-81 305.4 233 71.2
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 6.5e-70 268.1 193 74.6
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 3.4e-66 255.8 179 74.9
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 5.7e-66 255.0 177 70.1
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 2.8e-65 252.7 180 72.2
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 4.8e-65 251.9 180 72.2
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 8.3e-65 251.1 229 59.8
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 1.1e-64 250.8 233 58.8
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 4.1e-64 248.8 180 71.1
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 7.0e-64 248.1 193 67.9
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 7.0e-64 248.1 195 68.2
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 7.0e-64 248.1 195 66.2
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 1.2e-63 247.3 171 71.9
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 1.6e-63 246.9 233 59.2
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 2.7e-63 246.1 233 57.5
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 3.5e-63 245.7 191 67.5
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 5.9e-63 245.0 233 57.5
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 1.7e-62 243.4 191 66.0
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 2.2e-62 243.0 231 58.0
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 2.2e-62 243.0 195 66.7
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 2.2e-62 243.0 174 71.8
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 2.2e-62 243.0 174 71.8
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 3.8e-62 242.3 248 55.6
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 5.0e-62 241.9 201 64.2
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 8.5e-62 241.1 191 65.4
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 8.5e-62 241.1 231 58.0
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 1.5e-61 240.4 177 70.6
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 5.5e-61 238.4 234 55.6
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 9.4e-61 237.7 231 57.1
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.2e-60 237.3 191 64.4
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 1.6e-60 236.9 199 61.8
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 1.6e-60 236.9 180 67.8
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 2.1e-60 236.5 187 63.6
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 2.7e-60 236.1 197 64.5
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 4.7e-60 235.3 204 62.7
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 8.0e-60 234.6 196 61.7
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 2.3e-59 233.0 193 59.6
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 2.3e-59 233.0 177 66.7
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 3.0e-59 232.6 203 59.6
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 4.0e-59 232.3 173 66.5
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 4.0e-59 232.3 177 67.2
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 5.2e-59 231.9 203 60.6
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 1.2e-58 230.7 193 62.7
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 1.5e-58 230.3 207 58.9
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 3.4e-58 229.2 206 60.2
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 9.8e-58 227.6 206 58.7
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 9.8e-58 227.6 177 63.8
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 2.8e-57 226.1 176 64.2
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 3.7e-57 225.7 176 64.2
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 8.3e-57 224.6 185 64.3
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 2.4e-56 223.0 202 58.9
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 4.1e-56 222.2 185 64.9
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 5.4e-56 221.9 177 62.1
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 7.0e-56 221.5 199 58.8
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 7.0e-56 221.5 176 65.3
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 9.1e-56 221.1 206 57.8
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 9.1e-56 221.1 221 54.8
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 1.2e-55 220.7 177 63.8
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 5.9e-55 218.4 201 57.2
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 1.0e-54 217.6 188 59.6
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 1.0e-54 217.6 196 58.7
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 1.0e-54 217.6 185 63.2
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 1.7e-54 216.9 192 58.3
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 2.9e-54 216.1 201 57.2
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 2.9e-54 216.1 232 54.7
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 6.6e-54 214.9 191 59.2
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 6.6e-54 214.9 180 60.6
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 1.1e-53 214.2 191 56.5
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 1.5e-53 213.8 174 63.2
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 9.5e-53 211.1 206 54.4
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 9.5e-53 211.1 196 57.1
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 1.2e-52 210.7 191 58.6
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 1.2e-52 210.7 177 65.0
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 6.1e-52 208.4 178 61.2
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 2.6e-50 203.0 188 54.3
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 3.4e-50 202.6 188 54.3
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 3.4e-50 202.6 178 60.1
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 4.4e-50 202.2 179 58.1
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 5.7e-50 201.8 196 57.1
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 2.2e-49 199.9 189 54.5
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 2.8e-49 199.5 184 54.9
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 3.7e-49 199.1 187 52.9
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 2.4e-48 196.4 186 55.4
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 2.4e-48 196.4 186 55.4
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 5.4e-48 195.3 186 55.4
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 9.2e-48 194.5 187 54.0
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 9.2e-48 194.5 186 54.3
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 9.2e-48 194.5 186 54.3
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 5.0e-46 188.7 165 58.8
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 1.8e-43 180.3 151 64.9
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 8.9e-43 177.9 237 44.7
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 1.2e-39 167.5 149 55.0
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 3.9e-38 162.5 136 66.2
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 1.2e-31 141.0 177 42.4
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.2e-31 141.0 114 64.9
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 6.0e-31 138.7 177 39.5
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 1.8e-27 127.1 135 51.9
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 5.2e-27 125.6 186 37.6
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 2.2e-25 120.2 126 52.4
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 7.1e-24 115.2 114 53.5
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 3.9e-22 109.4 112 50.9
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 3.9e-22 109.4 75 66.7
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 5.1e-22 109.0 180 33.3
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 8.6e-22 108.2 179 34.1
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 4.3e-21 105.9 179 34.1
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 6.4e-17 92.0 63 63.5
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 7.8e-15 85.1 167 37.1
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 2.3e-14 83.6 190 32.1
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 5.8e-10 68.9 43 72.1
MD15G1370600 Malus domestica HOM05D006862 ORTHO05D008726 5.1e-06 55.8 33 75.8


User provided reference genes

Program Settings