Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 9.1e-188 660.2 364 100.0
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 9.1e-188 660.2 364 100.0
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 4.5e-187 657.9 362 100.0
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 9.1e-156 553.9 350 89.7
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 3.8e-154 548.5 352 85.8
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 1.8e-148 529.6 352 84.7
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.5e-147 525.0 360 82.8
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 2.3e-143 512.7 352 82.7
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 7.5e-142 507.7 352 80.1
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.1e-140 501.9 352 79.8
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.0e-139 499.6 352 80.4
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.0e-138 495.7 360 79.2
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 3.6e-136 488.8 352 79.8
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.8e-135 486.5 352 79.0
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.5e-134 483.4 352 78.4
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.2e-132 475.7 355 78.0
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 1.0e-130 470.7 352 76.1
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 1.0e-114 417.5 352 69.0
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 1.1e-113 414.1 352 65.3
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.0e-111 404.4 352 68.8
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 1.7e-109 400.2 352 64.5
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 1.9e-108 396.7 352 65.6
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 1.9e-108 396.7 352 65.6
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 3.0e-106 389.4 352 64.5
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 2.4e-100 369.8 352 61.4
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 3.2e-100 369.4 352 60.8
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 2.1e-99 366.7 233 86.7
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 2.7e-99 366.3 352 60.8
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.9e-97 360.1 352 58.5
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 1.4e-95 354.0 352 55.1
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 3.4e-94 349.4 352 58.5
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 3.2e-92 342.8 352 58.8
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.5e-89 334.0 352 54.8
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 3.7e-88 329.3 352 56.0
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 1.2e-86 324.3 352 55.7
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 4.9e-85 318.9 352 54.3
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 4.9e-85 318.9 352 52.6
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 8.4e-85 318.2 352 54.5
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 7.1e-84 315.1 352 51.1
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 1.2e-83 314.3 352 52.8
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 1.6e-83 313.9 352 52.8
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 2.7e-83 313.2 352 51.7
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 3.5e-83 312.8 352 51.7
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 7.9e-83 311.6 352 50.9
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 5.1e-82 308.9 352 52.8
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.5e-81 306.6 352 50.3
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 9.7e-81 304.7 180 97.2
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 1.3e-80 304.3 352 53.4
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.8e-80 303.1 358 51.7
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 3.7e-80 302.8 361 50.4
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 4.8e-80 302.4 352 49.4
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 6.3e-80 302.0 352 51.1
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 8.2e-80 301.6 352 50.9
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 4.5e-78 295.8 352 50.6
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 4.5e-78 295.8 352 50.6
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 1.0e-77 294.7 352 51.7
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 1.3e-77 294.3 352 48.3
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.7e-77 293.9 352 50.9
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 2.9e-77 293.1 352 50.6
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 3.8e-77 292.7 352 50.9
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 5.0e-77 292.4 155 98.7
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 1.1e-76 291.2 352 49.7
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 1.4e-76 290.8 352 50.9
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.9e-76 290.4 352 50.6
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 2.5e-76 290.0 352 51.1
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 2.5e-76 290.0 352 50.6
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.2e-75 287.7 352 47.2
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.6e-75 287.3 353 49.0
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 2.1e-75 287.0 357 52.4
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 3.6e-75 286.2 352 49.4
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 7.9e-75 285.0 352 50.0
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 5.1e-74 282.3 352 49.7
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 7.4e-73 278.5 350 49.1
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 2.2e-72 276.9 352 46.3
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 3.7e-72 276.2 352 48.3
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 2.4e-71 273.5 352 46.0
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 2.6e-70 270.0 352 44.9
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 2.6e-70 270.0 352 45.7
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 3.4e-70 269.6 352 44.9
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 7.7e-70 268.5 352 44.6
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 1.7e-69 267.3 353 47.3
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 1.7e-69 267.3 306 51.0
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 7.2e-68 261.9 356 44.7
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 1.6e-67 260.8 350 45.4
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 2.7e-67 260.0 352 44.9
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 4.7e-67 259.2 356 44.4
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 4.7e-67 259.2 352 48.6
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 5.1e-66 255.8 351 45.0
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 2.2e-64 250.4 352 44.6
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.8e-64 250.0 255 62.7
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 3.7e-64 249.6 352 46.0
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 6.3e-64 248.8 348 44.3
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 3.1e-63 246.5 352 42.9
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 4.1e-63 246.1 349 44.1
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 1.2e-62 244.6 352 43.2
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 3.5e-62 243.0 352 44.0
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 5.9e-62 242.3 352 43.2
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 2.9e-61 240.0 352 44.0
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 2.5e-60 236.9 352 45.7
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 3.2e-60 236.5 352 44.0
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 4.2e-60 236.1 352 43.5
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 4.2e-60 236.1 356 42.4
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 5.5e-60 235.7 343 43.7
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 5.5e-60 235.7 333 44.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 7.2e-60 235.3 353 43.9
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 7.2e-60 235.3 352 43.5
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 1.2e-59 234.6 352 38.9
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 2.1e-59 233.8 352 40.9
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 4.7e-59 232.6 352 43.5
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 6.1e-59 232.3 356 41.6
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 6.1e-59 232.3 356 41.6
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 6.1e-59 232.3 356 41.6
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 8.0e-59 231.9 352 44.6
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 1.4e-58 231.1 352 42.9
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 2.3e-58 230.3 352 42.9
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.0e-58 229.9 352 43.2
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.0e-58 229.9 352 43.2
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 6.7e-58 228.8 356 41.3
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 3.7e-56 223.0 352 42.3
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 8.2e-56 221.9 352 44.3
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 8.2e-56 221.9 352 42.3
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 3.1e-55 219.9 331 41.1
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 5.3e-55 219.2 259 49.0
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 9.1e-55 218.4 352 41.8
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 3.5e-54 216.5 352 40.1
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 2.5e-52 210.3 352 42.3
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 8.0e-51 205.3 352 41.5
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 1.7e-48 197.6 352 38.6
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 6.3e-48 195.7 131 86.3
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 7.0e-47 192.2 235 47.7
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 4.5e-46 189.5 352 39.2
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 9.4e-44 181.8 352 34.9
RcHm_v2.0_Chr0c28g0500891 Rosa chinensis HOM05D003496 ORTHO05D003909 6.3e-32 142.5 78 98.7
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.0e-29 135.2 82 82.9
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 5.6e-28 129.4 352 28.4
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 4.7e-27 126.3 338 29.9
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 6.1e-27 125.9 183 45.9
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 1.8e-26 124.4 334 29.0
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 6.8e-26 122.5 78 85.9
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 3.7e-24 116.7 184 42.9
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 8.3e-24 115.5 352 29.0
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.0e-22 110.9 102 60.8
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 4.7e-19 99.8 404 25.7
MBI19_g10187_MAGBIO Magnolia biondii HOM05D020163 ORTHO05D003909 3.5e-14 83.6 102 49.0
MBI02_g14193_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D003909 1.6e-11 74.7 67 62.7
MBI08_g24353_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 4.7e-11 73.2 67 59.7
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 6.2e-11 72.8 148 31.1
MBI05_g41336_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 1.8e-10 71.2 67 59.7
MBI16_g15384_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D003909 1.3e-08 65.1 59 61.0
Sabra19G0001200 Salix brachista HOM05D000340 ORTHO05D000677 4.9e-08 63.2 81 45.7
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 8.4e-08 62.4 63 50.8
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 1.4e-07 61.6 38 81.6
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 3.2e-07 60.5 68 44.1
MBI05_g14901_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 5.4e-07 59.7 127 36.2
BcaB06g27425 Brassica carinata HOM05D003496 ORTHO05D003909 1.6e-06 58.2 131 35.1
ECA233G3681 Erigeron canadensis HOM05D003496 ORTHO05D003909 1.6e-06 58.2 210 27.1
FvH4_5g37650 Fragaria vesca HOM05D000762 ORTHO05D045981 1.6e-06 58.2 59 57.6
FAN18G1978 Fragaria x ananassa HOM05D000762 ORTHO05D045981 1.6e-06 58.2 59 57.6
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 7.8e-06 55.8 180 33.3


User provided reference genes

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