Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 6.1e-157 557.4 268 100.0
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 7.0e-153 543.9 268 97.8
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 1.4e-124 449.9 217 98.6
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 7.3e-118 427.6 287 76.0
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.1e-113 413.7 287 72.5
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 4.3e-110 401.7 302 68.9
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 7.3e-110 401.0 302 68.9
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 2.2e-106 389.4 301 65.8
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 1.6e-104 383.3 287 67.2
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 3.0e-103 379.0 291 64.9
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 7.1e-97 357.8 279 62.7
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 2.7e-96 355.9 277 62.8
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.0e-95 354.0 277 62.1
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 7.3e-94 347.8 281 60.9
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 3.6e-93 345.5 277 60.6
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 4.0e-92 342.0 277 59.6
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 7.6e-91 337.8 277 61.7
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 1.3e-90 337.0 277 59.9
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 3.8e-90 335.5 277 61.7
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 6.4e-90 334.7 277 60.3
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 2.4e-89 332.8 345 51.6
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 2.4e-89 332.8 277 57.4
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 3.2e-89 332.4 277 58.1
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 3.2e-89 332.4 277 59.2
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 5.4e-89 331.6 277 59.9
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 9.3e-89 330.9 277 58.5
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 2.7e-88 329.3 278 59.0
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 4.6e-88 328.6 277 57.4
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 6.0e-88 328.2 276 58.3
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.0e-87 327.4 276 57.6
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.0e-87 327.4 276 57.6
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 1.0e-87 327.4 277 58.1
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.0e-87 327.4 277 58.8
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 1.3e-87 327.0 277 58.1
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 1.7e-87 326.6 277 57.0
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 1.7e-87 326.6 277 59.2
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 2.3e-87 326.2 277 58.1
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 3.9e-87 325.5 277 58.1
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 5.1e-87 325.1 277 58.1
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 6.6e-87 324.7 277 58.1
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.1e-86 323.9 277 57.8
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.3e-86 322.4 279 57.0
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.3e-86 322.4 279 57.0
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 4.3e-86 322.0 293 56.0
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 5.6e-86 321.6 277 57.0
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 9.6e-86 320.9 277 58.1
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.3e-85 320.5 293 55.6
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.6e-85 320.1 277 58.5
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.8e-85 319.3 282 56.4
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 6.2e-85 318.2 278 55.0
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 8.1e-85 317.8 279 57.3
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.4e-84 317.0 277 55.6
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 2.4e-84 316.2 277 56.0
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.4e-84 316.2 277 57.8
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 3.1e-84 315.8 306 53.6
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 3.1e-84 315.8 306 53.6
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 5.3e-84 315.1 277 58.1
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 5.3e-84 315.1 282 55.0
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 5.3e-84 315.1 301 53.2
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 1.5e-83 313.5 318 52.8
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.5e-83 313.5 276 56.5
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 3.4e-83 312.4 279 55.9
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 1.7e-82 310.1 276 56.5
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 2.2e-82 309.7 277 54.5
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 4.9e-82 308.5 276 55.1
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 6.4e-82 308.1 276 56.2
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 1.1e-81 307.4 276 55.1
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.4e-81 307.0 287 54.7
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 3.2e-81 305.8 277 55.6
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 4.2e-81 305.4 276 54.7
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 4.2e-81 305.4 276 54.7
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 5.4e-81 305.1 276 55.1
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 7.1e-81 304.7 277 55.2
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 9.3e-81 304.3 289 53.3
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 2.1e-80 303.1 278 55.4
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 6.0e-80 301.6 287 54.0
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 6.0e-80 301.6 278 54.7
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 6.0e-80 301.6 277 54.9
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 7.9e-80 301.2 260 58.5
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 6.7e-79 298.1 276 55.1
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 8.7e-79 297.7 311 49.8
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.9e-78 296.6 275 53.5
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 2.5e-78 296.2 277 54.2
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.7e-77 292.4 277 53.1
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.4e-76 290.4 279 52.7
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.8e-76 290.0 277 51.6
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 9.0e-76 287.7 279 50.5
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 9.0e-76 287.7 277 50.5
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 5.8e-75 285.0 239 57.7
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.9e-73 280.0 270 51.1
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.9e-73 280.0 277 48.7
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 7.1e-73 278.1 270 52.6
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 3.9e-71 272.3 278 52.5
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.9e-65 253.4 393 38.4
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 2.2e-61 240.0 249 51.0
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 5.3e-60 235.3 250 51.6
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 5.5e-57 225.3 187 57.8
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 8.2e-53 211.5 124 79.0
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 1.8e-52 210.3 279 39.1
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 5.5e-49 198.7 223 43.9
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 3.0e-47 193.0 275 38.9
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.7e-45 187.2 280 36.4
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 2.8e-45 186.4 279 36.9
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.7e-45 186.0 219 45.7
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 8.5e-42 174.9 97 83.5
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 1.4e-41 174.1 140 58.6
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.5e-38 164.1 85 88.2
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 1.8e-36 157.1 87 79.3
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 1.9e-33 147.1 82 81.7
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.0e-31 141.4 136 52.2
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.3e-29 134.4 156 47.4
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 4.8e-29 132.5 303 31.4
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 3.1e-28 129.8 77 72.7
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 3.1e-28 129.8 75 80.0
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 7.2e-25 118.6 81 66.7
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.4e-12 77.8 83 45.8
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.0e-11 73.9 64 54.7
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 2.7e-11 73.6 73 49.3
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 3.5e-11 73.2 71 50.7
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 3.5e-11 73.2 46 69.6
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 7.8e-11 72.0 46 67.4


User provided reference genes

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