Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 2.3e-205 718.8 388 100.0
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 2.0e-193 679.1 357 93.0
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.0e-193 679.1 357 93.0
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.8e-187 658.7 337 92.3
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.2e-184 649.0 339 92.3
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.6e-174 616.3 360 82.2
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 2.8e-171 605.5 359 80.2
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 1.1e-170 603.6 337 84.6
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.1e-170 603.6 360 81.1
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 2.9e-168 595.5 359 79.7
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 8.5e-168 594.0 359 78.8
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 2.1e-166 589.3 357 79.0
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 6.1e-166 587.8 361 78.7
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.0e-165 587.0 361 78.1
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.4e-165 586.6 358 79.3
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 3.9e-165 585.1 357 80.4
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 5.2e-165 584.7 357 78.2
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 6.7e-165 584.3 358 77.9
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.0e-164 582.8 363 76.9
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 2.6e-164 582.4 357 79.3
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.7e-164 581.3 363 76.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.7e-163 579.7 359 78.0
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.2e-163 579.3 363 76.6
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.8e-163 578.9 363 76.6
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 6.3e-163 577.8 361 78.1
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 8.2e-163 577.4 337 82.2
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 8.2e-163 577.4 359 78.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 7.0e-162 574.3 338 80.5
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 2.0e-161 572.8 361 76.2
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 5.9e-161 571.2 338 80.2
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 7.7e-161 570.9 338 79.9
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 1.3e-160 570.1 356 76.7
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.7e-160 569.7 335 83.3
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.7e-160 569.7 356 76.4
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.8e-160 568.5 339 79.9
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 6.5e-160 567.8 338 79.9
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 6.5e-160 567.8 362 76.0
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 8.5e-160 567.4 361 75.9
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.5e-159 566.6 338 80.2
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.5e-159 566.6 339 79.1
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.6e-158 562.0 362 76.8
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 4.7e-158 561.6 339 79.1
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 6.1e-158 561.2 360 75.3
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 8.0e-158 560.8 356 73.6
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.3e-157 559.3 363 74.4
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 3.0e-157 558.9 338 78.7
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.0e-157 558.9 356 75.6
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 4.0e-157 558.5 338 78.7
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 4.0e-157 558.5 361 75.3
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.2e-156 557.0 359 74.4
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.5e-156 556.6 359 76.0
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 2.0e-156 556.2 338 78.4
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.3e-156 555.4 339 79.9
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 4.4e-156 555.1 358 74.6
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 4.4e-156 555.1 358 74.6
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.7e-155 553.1 335 79.4
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.8e-155 552.4 335 79.7
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 3.7e-155 552.0 335 78.8
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 3.7e-155 552.0 335 78.8
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 3.7e-155 552.0 357 73.9
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 4.8e-155 551.6 339 76.7
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-154 550.4 336 78.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.1e-154 548.9 359 73.3
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 2.7e-153 545.8 335 76.7
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.0e-152 543.9 358 72.9
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.3e-152 543.5 335 74.9
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.3e-152 543.5 337 74.5
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.0e-152 541.6 357 72.8
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.5e-151 539.3 337 74.5
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 4.2e-151 538.5 327 74.6
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.2e-150 537.0 335 77.3
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.6e-150 536.6 339 75.5
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.6e-150 536.6 357 70.9
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.1e-150 534.6 339 75.2
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 8.0e-150 534.3 337 77.2
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 3.0e-149 532.3 352 71.6
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 5.2e-149 531.6 359 71.3
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.2e-148 530.4 352 71.6
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 2.6e-148 529.3 358 72.6
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 5.7e-148 528.1 373 67.6
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 7.5e-148 527.7 339 75.2
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 7.5e-148 527.7 355 71.5
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 7.5e-148 527.7 337 74.2
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 7.5e-148 527.7 358 70.1
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 2.2e-147 526.2 337 74.2
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 6.3e-147 524.6 367 67.8
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.3e-147 524.2 282 89.4
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.4e-146 523.5 339 74.3
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.4e-146 522.7 354 70.3
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 5.4e-146 521.5 356 69.4
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.1e-146 520.8 309 78.0
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.2e-145 520.4 356 70.2
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.6e-145 520.0 363 72.2
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 2.0e-145 519.6 358 69.3
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 2.0e-145 519.6 356 70.5
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 4.5e-145 518.5 356 69.9
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.3e-144 516.9 301 80.1
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.3e-144 516.9 356 69.9
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.3e-144 516.2 337 72.4
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 5.5e-143 511.5 337 70.0
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 5.5e-143 511.5 358 70.4
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 7.2e-143 511.1 300 77.7
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 6.1e-142 508.1 304 77.6
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 8.0e-142 507.7 358 70.4
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.8e-141 506.5 339 71.4
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.5e-140 503.4 345 69.9
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 2.0e-140 503.1 336 72.6
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 2.6e-140 502.7 363 67.5
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.6e-140 502.7 360 67.5
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 4.4e-140 501.9 335 71.9
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.7e-139 500.0 337 71.2
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.9e-139 498.4 321 74.5
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.2e-134 483.8 336 67.9
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 6.8e-133 478.0 365 65.2
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.2e-131 473.0 324 68.8
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 2.4e-130 469.5 365 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 3.0e-128 462.6 336 65.5
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 3.0e-128 462.6 366 63.1
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 3.3e-127 459.1 352 64.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.6e-126 456.8 320 69.1
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 5.2e-125 451.8 329 63.5
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 7.5e-124 448.0 357 62.2
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.0e-120 437.6 326 64.4
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.1e-119 434.1 301 66.1
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.2e-117 425.2 248 78.6
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 4.9e-115 418.7 325 62.8
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 3.2e-114 416.0 328 60.4
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.1e-114 415.6 304 68.4
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 7.8e-113 411.4 360 58.3
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.1e-111 407.5 340 58.2
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-110 404.1 198 94.9
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.8e-109 400.2 316 63.3
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.3e-99 367.5 203 84.2
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.3e-94 350.9 198 80.3
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.6e-89 334.0 219 74.9
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 6.7e-88 328.6 177 88.1
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.5e-87 327.4 228 71.9
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.9e-87 327.0 231 71.4
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 4.0e-85 319.3 253 60.1
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 9.3e-82 308.1 231 64.9
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 7.9e-81 305.1 221 69.7
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.4e-77 294.3 401 40.1
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 5.1e-72 275.8 343 42.0
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 6.7e-72 275.4 304 45.4
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.1e-69 266.5 203 59.1
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 8.5e-59 231.9 351 36.8
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 7.9e-57 225.3 190 58.4
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.6e-52 210.3 348 37.9
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.8e-46 189.5 124 75.8
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.8e-39 165.2 147 59.9
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.5e-34 151.4 121 60.3
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.2e-34 150.2 113 69.0
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.2e-23 115.2 57 91.2
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.3e-22 109.0 66 77.3
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 8.3e-06 55.8 43 62.8


User provided reference genes

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