Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0243001 Rosa chinensis HOM05D002457 ORTHO05D005750 2.3e-234 815.1 385 100.0
RcHm_v2.0_Chr7g0243141 Rosa chinensis HOM05D002457 ORTHO05D005750 2.4e-199 698.7 541 66.7
RcHm_v2.0_Chr7g0243351 Rosa chinensis HOM05D002457 ORTHO05D005750 1.7e-197 692.6 541 66.2
FvH4_5g36800 Fragaria vesca HOM05D002457 ORTHO05D005750 1.9e-183 646.0 540 63.3
FAN13G1549 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.1e-172 610.1 599 56.6
FAN18G1557 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.8e-170 602.8 596 56.2
FAN04G0153 Fragaria x ananassa HOM05D002457 ORTHO05D005750 3.6e-158 562.0 593 54.0
Prupe.1G521300 Prunus persica HOM05D002457 ORTHO05D005750 1.5e-148 530.0 549 51.9
FAN08G0375 Fragaria x ananassa HOM05D002457 ORTHO05D005750 2.6e-145 519.2 805 41.5
MD08G1186800 Malus domestica HOM05D002457 ORTHO05D005750 3.4e-145 518.8 548 51.1
MD15G1372700 Malus domestica HOM05D002457 ORTHO05D005750 6.7e-141 504.6 550 50.2
CiPaw.07G177900 Carya illinoinensis HOM05D002457 ORTHO05D005750 2.4e-130 469.5 549 47.2
Dinv19118 Davidia involucrata HOM05D002457 ORTHO05D005750 5.9e-129 464.9 547 48.4
Cfa013661 Carpinus fangiana HOM05D002457 ORTHO05D005750 6.8e-125 451.4 549 45.7
CSS0003030 Camellia sinensis var. sinensis HOM05D002457 ORTHO05D005750 2.4e-122 443.0 538 45.7
QL12p037399 Quercus lobata HOM05D002457 ORTHO05D005750 7.7e-121 438.0 549 45.4
QL12p038698 Quercus lobata HOM05D002457 ORTHO05D005750 7.7e-121 438.0 549 45.4
GSVIVG01009071001 Vitis vinifera HOM05D002457 ORTHO05D005750 1.6e-118 430.3 548 44.3
Potri.002G099400 Populus trichocarpa HOM05D002457 ORTHO05D005750 2.0e-116 423.3 548 43.2
Thecc.08G103800 Theobroma cacao HOM05D002457 ORTHO05D005750 5.7e-116 421.8 550 44.4
Manes.18G065400 Manihot esculenta HOM05D002457 ORTHO05D005750 4.9e-115 418.7 549 42.8
TWI12G1349 Tripterygium wilfordii HOM05D002457 ORTHO05D005750 4.9e-115 418.7 547 42.0
Haze_22295 Corylus avellana HOM05D002457 ORTHO05D005750 3.1e-114 416.0 541 44.5
Ciclev10000161m.g Citrus clementina HOM05D002457 ORTHO05D005750 1.6e-113 413.7 547 43.7
vmacro21245 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 3.5e-113 412.5 551 44.1
COL.COLO4_12026 Corchorus olitorius HOM05D002457 ORTHO05D005750 5.9e-113 411.8 548 43.8
Sabra02G0078000 Salix brachista HOM05D002457 ORTHO05D005750 8.9e-109 397.9 567 40.9
Medtr3g099370 Medicago truncatula HOM05D002457 ORTHO05D005750 2.0e-108 396.7 549 41.9
Gohir.A01G132300 Gossypium hirsutum HOM05D002457 ORTHO05D005750 3.4e-108 396.0 552 40.0
Lj4C97T15 Lonicera japonica HOM05D002457 ORTHO05D005750 3.4e-108 396.0 551 41.2
CANSAT54G2291 Cannabis sativa HOM05D002457 ORTHO05D005750 1.3e-107 394.0 546 41.9
Gorai.002G140900 Gossypium raimondii HOM05D002457 ORTHO05D005750 1.7e-107 393.7 551 39.9
Gohir.D01G115200 Gossypium hirsutum HOM05D002457 ORTHO05D005750 2.2e-107 393.3 551 39.9
TPR.G14216 Trifolium pratense HOM05D002457 ORTHO05D005750 2.9e-107 392.9 548 41.8
Cpa.g.sc36.164 Carica papaya HOM05D002457 ORTHO05D005750 2.0e-105 386.7 534 42.1
Lalb_Chr11g0065321 Lupinus albus HOM05D002457 ORTHO05D005750 1.7e-104 383.6 549 42.3
Rhsim06G0078900 Rhododendron simsii HOM05D002457 ORTHO05D005750 6.6e-104 381.7 558 41.2
Psat5g051160 Pisum sativum HOM05D002457 ORTHO05D005750 2.8e-102 376.3 549 41.0
TAR381G1374 Trochodendron aralioides HOM05D002457 ORTHO05D005750 1.1e-101 374.4 511 41.9
Glyma.06G101600 Glycine max HOM05D002457 ORTHO05D005750 2.3e-101 373.2 549 40.4
Lj1g0014547 Lotus japonicus HOM05D002457 ORTHO05D005750 2.3e-101 373.2 545 40.9
CsaV3_2G029800 Cucumis sativus L. HOM05D002457 ORTHO05D005750 8.9e-101 371.3 547 39.9
Aqoxy6G00731 Aquilegia oxysepala HOM05D002457 ORTHO05D005750 1.5e-100 370.5 553 40.3
ClCG08G011220 Citrullus lanatus HOM05D002457 ORTHO05D005750 2.6e-100 369.8 547 39.9
Phvul.009G032400 Phaseolus vulgaris HOM05D002457 ORTHO05D005750 2.6e-100 369.8 549 39.7
Nn1g05429 Nelumbo nucifera HOM05D002457 ORTHO05D005750 4.9e-99 365.5 552 38.9
arahy.Tifrunner.gnm1.ann1.Y876JP Arachis hypogaea HOM05D002457 ORTHO05D005750 8.3e-99 364.8 569 39.5
Sed0005289 Sechium edule HOM05D002457 ORTHO05D005750 8.3e-99 364.8 532 40.4
MELO3C011038.2 Cucumis melo HOM05D002457 ORTHO05D005750 6.0e-97 358.6 547 38.8
PGR042G2032 Punica granatum HOM05D002457 ORTHO05D005750 5.6e-95 352.1 542 39.7
Eucgr.F00367 Eucalyptus grandis HOM05D002457 ORTHO05D005750 7.3e-95 351.7 543 40.0
Oeu054770.1 Olea europaea HOM05D002457 ORTHO05D005750 7.3e-95 351.7 545 39.4
arahy.Tifrunner.gnm1.ann1.H9D2WH Arachis hypogaea HOM05D002457 ORTHO05D005750 2.1e-94 350.1 560 39.3
Nitab4.5_0000786g0170 Nicotiana tabacum HOM05D002457 ORTHO05D005750 1.5e-92 344.0 547 38.6
CAN.G970.12 Capsicum annuum HOM05D002457 ORTHO05D005750 7.5e-92 341.7 533 40.3
Peaxi162Scf00030g01716 Petunia axillaris HOM05D002457 ORTHO05D005750 9.9e-92 341.3 536 39.2
Solyc04g074490.3 Solanum lycopersicum HOM05D002457 ORTHO05D005750 1.3e-91 340.9 532 39.5
PSO210G3704 Papaver somniferum HOM05D002457 ORTHO05D005750 2.2e-91 340.1 543 36.8
Sopen04g029500 Solanum pennellii HOM05D002457 ORTHO05D005750 4.9e-91 339.0 532 39.1
Cc10_g06810 Coffea canephora HOM05D002457 ORTHO05D005750 1.1e-90 337.8 537 36.1
THA.LOC104810709 Tarenaya hassleriana HOM05D002457 ORTHO05D005750 1.2e-89 334.3 547 38.8
ECA232G3235 Erigeron canadensis HOM05D002457 ORTHO05D005750 2.3e-88 330.1 532 37.4
Migut.N02884 Erythranthe guttata HOM05D002457 ORTHO05D005750 3.0e-88 329.7 552 37.0
DCAR_019216 Daucus carota HOM05D002457 ORTHO05D005750 5.1e-88 328.9 548 37.0
PSO447G0244 Papaver somniferum HOM05D002457 ORTHO05D005750 1.5e-87 327.4 543 36.1
MSTRG.22163 Avicennia marina HOM05D002457 ORTHO05D005750 6.2e-86 322.0 546 37.5
Gohir.A05G224700 Gossypium hirsutum HOM05D002457 ORTHO05D005750 8.1e-86 321.6 548 36.3
Gorai.009G234900 Gossypium raimondii HOM05D002457 ORTHO05D005750 1.4e-85 320.9 548 36.1
Atru.chr13.1133 Acer truncatum HOM05D002457 ORTHO05D005750 1.8e-85 320.5 438 42.5
Gohir.D05G227200 Gossypium hirsutum HOM05D002457 ORTHO05D005750 1.8e-85 320.5 548 35.9
SGA_v2.0_scaffold28G11909 Striga asiatica HOM05D002457 ORTHO05D005750 2.4e-85 320.1 549 36.6
AT1G78280 Arabidopsis thaliana HOM05D002457 ORTHO05D005750 5.2e-85 318.9 539 37.1
Aa31LG4G8280 Aethionema arabicum HOM05D002457 ORTHO05D005750 6.8e-85 318.5 518 38.2
Carub.0002s2518 Capsella rubella HOM05D002457 ORTHO05D005750 6.8e-85 318.5 542 37.5
AL2G38630 Arabidopsis lyrata HOM05D002457 ORTHO05D005750 8.9e-85 318.2 570 36.1
BcaB03g16003 Brassica carinata HOM05D002457 ORTHO05D005750 2.6e-84 316.6 544 36.9
Thhalv10018079m.g Eutrema salsugineum HOM05D002457 ORTHO05D005750 1.7e-83 313.9 544 37.7
EL10Ac1g01165 Beta vulgaris HOM05D002457 ORTHO05D005750 1.1e-82 311.2 543 35.7
Sp5g33400 Schrenkiella parvula HOM05D002457 ORTHO05D005750 3.2e-82 309.7 544 36.8
CARHR071750 Cardamine hirsuta HOM05D002457 ORTHO05D005750 9.2e-82 308.1 548 35.9
HanXRQChr09g0250381 Helianthus annuus HOM05D002457 ORTHO05D005750 9.2e-82 308.1 529 35.2
vmacro21299 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 1.6e-81 307.4 549 37.9
BcaB05g25129 Brassica carinata HOM05D002457 ORTHO05D005750 2.7e-81 306.6 535 37.6
Lsat_1_v5_gn_9_72780 Lactuca sativa HOM05D002457 ORTHO05D005750 4.6e-81 305.8 529 34.8
C06p52240 Brassica napus HOM05D002457 ORTHO05D005750 6.0e-81 305.4 545 35.6
BolC6t40246H Brassica oleracea HOM05D002457 ORTHO05D005750 1.0e-80 304.7 545 35.6
BcaC08g47405 Brassica carinata HOM05D002457 ORTHO05D005750 1.7e-80 303.9 545 35.2
A07p43570 Brassica napus HOM05D002457 ORTHO05D005750 3.0e-80 303.1 545 35.4
BraA07t31869Z Brassica rapa HOM05D002457 ORTHO05D005750 3.0e-80 303.1 545 35.4
Ah.05g169750 Amaranthus hybridus HOM05D002457 ORTHO05D005750 9.6e-79 298.1 549 34.8
AUR62027799 Chenopodium quinoa HOM05D002457 ORTHO05D005750 8.1e-78 295.0 525 35.8
SGA_v2.0_scaffold84G26485 Striga asiatica HOM05D002457 ORTHO05D005750 4.4e-76 289.3 565 33.3
AUR62018953 Chenopodium quinoa HOM05D002457 ORTHO05D005750 9.9e-76 288.1 538 34.8
SalBow8G1618 Salvia bowleyana HOM05D002457 ORTHO05D005750 1.7e-75 287.3 539 35.8
Actinidia10339 Actinidia chinensis HOM05D002457 ORTHO05D005750 6.4e-75 285.4 246 60.6
Ca_16043_v3 Cicer arietinum L. HOM05D002457 ORTHO05D005750 1.1e-74 284.6 477 37.9
Sc23g0000320 Simmondsia chinensis HOM05D002457 ORTHO05D005750 1.0e-72 278.1 494 36.0
ATR0782G122 Amborella trichopoda HOM05D002457 ORTHO05D005750 8.7e-72 275.0 571 32.7
Hund26976 Selenicereus undatus HOM05D002457 ORTHO05D005750 6.2e-70 268.9 556 31.3
CDE03G0287 Ceratophyllum demersum HOM05D002457 ORTHO05D005750 2.0e-68 263.8 509 35.4
Dinv44797 Davidia involucrata HOM05D002457 ORTHO05D005750 4.2e-66 256.1 205 60.0
Os03g0389900 Oryza sativa ssp. japonica HOM05D002457 ORTHO05D005750 1.4e-61 241.1 532 32.9
Zm00001eb018970 Zea mays HOM05D002457 ORTHO05D005750 1.5e-60 237.7 532 31.8
C02p35500 Brassica napus HOM05D002457 ORTHO05D005750 5.5e-58 229.2 417 37.4
BolC2t09568H Brassica oleracea HOM05D002457 ORTHO05D005750 1.2e-57 228.0 433 35.8
Nitab4.5_0006196g0020 Nicotiana tabacum HOM05D002457 ORTHO05D005750 4.0e-53 213.0 206 52.4
RcHm_v2.0_Chr7g0242951 Rosa chinensis HOM05D002457 ORTHO05D005750 6.0e-49 199.1 123 77.2
BcaC03g15804 Brassica carinata HOM05D002457 ORTHO05D005750 1.0e-48 198.4 397 35.8
unitig_8.g3608 Utricularia gibba HOM05D002457 ORTHO05D005750 5.7e-47 192.6 231 44.2
MBI02_g33236_MAGBIO Magnolia biondii HOM05D002457 ORTHO05D005750 1.1e-45 188.3 406 32.3
HPP92_011193 Vanilla planifolia HOM05D002457 ORTHO05D005750 1.8e-45 187.6 252 40.9
HPP92_011163 Vanilla planifolia HOM05D002457 ORTHO05D005750 6.7e-40 169.1 460 27.6
RcHm_v2.0_Chr7g0242931 Rosa chinensis HOM05D002457 ORTHO05D005750 5.7e-39 166.0 161 55.9
Actinidia10338 Actinidia chinensis HOM05D002457 ORTHO05D005750 9.7e-39 165.2 145 57.2
Glyma.04G100002 Glycine max HOM05D002457 ORTHO05D005750 7.2e-34 149.1 134 57.5
HPP92_011199 Vanilla planifolia HOM05D002457 ORTHO05D005750 4.7e-33 146.4 157 45.9
SMO351G0300 Selaginella moellendorffii HOM05D002457 ORTHO05D005750 8.8e-32 142.1 491 24.8
Dinv44796 Davidia involucrata HOM05D002457 ORTHO05D005750 1.8e-29 134.4 124 53.2
Cpa.g.sc36.165 Carica papaya HOM05D002457 ORTHO05D005750 5.9e-28 129.4 110 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4998 Anthoceros agrestis HOM05D002457 ORTHO05D005750 1.7e-27 127.9 554 24.4
SEGI_24064 Sequoiadendron giganteum HOM05D002457 ORTHO05D005750 3.9e-24 116.7 146 46.6
Ca_14149_v3 Cicer arietinum L. HOM05D000298 ORTHO05D000553 4.8e-22 109.8 141 46.1
Mapoly0027s0020 Marchantia polymorpha HOM05D002457 ORTHO05D005750 6.3e-22 109.4 292 28.4
Pp3c7_15150 Physcomitrium patens HOM05D002457 ORTHO05D005750 1.2e-17 95.1 178 29.8
MBI02_g27963_MAGBIO Magnolia biondii HOM05D002457 ORTHO05D005750 2.7e-17 94.0 75 64.0
Actinidia30789 Actinidia chinensis HOM05D002457 ORTHO05D005750 4.0e-16 90.1 95 48.4
Pp3c11_17580 Physcomitrium patens HOM05D002457 ORTHO05D005750 1.4e-13 81.6 177 26.6
AagrBONN_evm.TU.Sc2ySwM_228.5005 Anthoceros agrestis HOM05D002457 ORTHO05D005750 1.8e-13 81.3 167 32.9


User provided reference genes

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