Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 3.1e-44 181.4 91 100.0
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.2e-27 126.3 86 77.9
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 2.2e-26 122.1 86 74.4
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-26 122.1 86 74.4
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-26 122.1 86 74.4
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-26 122.1 86 74.4
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.8e-26 121.3 86 73.3
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 5.5e-25 117.5 86 72.1
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 5.5e-25 117.5 85 72.9
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 5.5e-25 117.5 86 69.8
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 1.5e-22 109.4 85 67.1
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.5e-22 108.6 84 65.5
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 7.4e-22 107.1 86 62.8
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 9.7e-22 106.7 86 62.8
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 9.7e-22 106.7 86 61.6
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.6e-21 105.9 86 65.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 3.7e-21 104.8 86 60.5
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 4.8e-21 104.4 85 64.7
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 1.1e-20 103.2 86 61.6
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.4e-20 102.8 86 61.6
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 1.4e-20 102.8 82 63.4
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.4e-20 102.8 84 63.1
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.8e-20 102.4 86 62.8
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.8e-20 102.4 86 62.8
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.8e-20 102.4 86 62.8
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 2.4e-20 102.1 86 61.6
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.4e-20 102.1 86 60.5
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 3.1e-20 101.7 85 61.2
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 3.1e-20 101.7 86 62.8
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 3.1e-20 101.7 85 61.2
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 4.1e-20 101.3 86 62.8
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.1e-20 101.3 85 61.2
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 4.1e-20 101.3 85 61.2
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 5.3e-20 100.9 85 60.0
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 5.3e-20 100.9 86 61.6
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 6.9e-20 100.5 87 62.1
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 9.0e-20 100.1 86 59.3
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 9.0e-20 100.1 86 59.3
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 9.0e-20 100.1 86 60.5
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.2e-19 99.8 87 58.6
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.5e-19 99.4 86 60.5
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.0e-19 99.0 86 59.3
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.0e-19 99.0 86 59.3
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 2.0e-19 99.0 86 60.5
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 2.6e-19 98.6 86 60.5
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.6e-19 98.6 85 60.0
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 3.4e-19 98.2 86 60.5
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 3.4e-19 98.2 86 60.5
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 3.4e-19 98.2 86 60.5
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 4.5e-19 97.8 86 60.5
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 4.5e-19 97.8 87 57.5
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 4.5e-19 97.8 88 60.2
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 5.9e-19 97.4 86 58.1
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 5.9e-19 97.4 88 59.1
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 7.6e-19 97.1 82 62.2
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 7.6e-19 97.1 86 58.1
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 7.6e-19 97.1 87 58.6
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.0e-18 96.7 86 59.3
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.7e-18 95.9 83 59.0
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.2e-18 95.5 86 57.0
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.2e-18 95.5 86 57.0
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 2.2e-18 95.5 86 55.8
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 6.5e-18 94.0 88 54.5
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 8.5e-18 93.6 88 55.7
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.1e-17 93.2 86 53.5
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.4e-17 92.8 84 58.3
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.9e-17 92.4 87 57.5
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.9e-17 92.4 86 54.7
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.9e-17 92.4 85 56.5
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 2.5e-17 92.0 84 54.8
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.5e-17 92.0 84 58.3
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 2.5e-17 92.0 87 56.3
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 3.2e-17 91.7 86 55.8
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 4.2e-17 91.3 85 58.8
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 9.3e-17 90.1 86 55.8
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 9.3e-17 90.1 87 56.3
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.2e-16 89.7 86 57.0
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-16 89.7 85 55.3
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.6e-16 89.4 87 56.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.6e-16 89.4 87 56.3
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 2.1e-16 89.0 84 56.0
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.1e-16 89.0 82 57.3
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 3.6e-16 88.2 90 52.2
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.6e-16 88.2 86 53.5
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 4.6e-16 87.8 84 53.6
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 4.6e-16 87.8 85 54.1
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 6.1e-16 87.4 87 55.2
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 7.9e-16 87.0 86 53.5
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 7.9e-16 87.0 86 53.5
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 7.9e-16 87.0 85 55.3
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.8e-15 85.9 85 52.9
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 2.3e-15 85.5 88 52.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 3.0e-15 85.1 83 50.6
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 3.9e-15 84.7 84 54.8
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 5.1e-15 84.3 87 50.6
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 6.7e-15 84.0 84 54.8
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 6.7e-15 84.0 86 53.5
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 8.8e-15 83.6 87 51.7
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 8.8e-15 83.6 85 52.9
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.1e-14 83.2 90 51.1
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.1e-14 83.2 85 54.1
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.5e-14 82.0 90 51.1
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 3.3e-14 81.6 88 50.0
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 3.3e-14 81.6 87 50.6
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 9.7e-14 80.1 87 51.7
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.7e-13 79.3 87 48.3
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 2.8e-13 78.6 81 53.1
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.4e-12 76.3 83 45.8
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 2.4e-12 75.5 87 42.5
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.7e-10 69.3 86 44.2
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.2e-10 68.9 57 56.1
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 6.5e-10 67.4 81 51.9
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.1e-09 66.6 51 64.7
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 6.1e-08 60.8 66 43.9
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 6.1e-08 60.8 70 51.4
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.9e-07 58.2 86 34.9
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 5.1e-07 57.8 88 34.1
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.1e-06 56.6 78 35.9
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 2.6e-06 55.5 55 49.1
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 9.7e-06 53.5 86 32.6


User provided reference genes

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