Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0242491 Rosa chinensis HOM05D006385 ORTHO05D007948 1.2e-94 349.7 172 100.0
FvH4_5g36620 Fragaria vesca HOM05D006385 ORTHO05D007948 6.8e-77 290.8 243 65.8
RcHm_v2.0_Chr7g0242391 Rosa chinensis HOM05D006385 ORTHO05D007948 6.4e-75 284.3 243 64.2
FAN08G3484 Fragaria x ananassa HOM05D000076 ORTHO05D002730 1.9e-74 282.7 243 64.2
Hma1.2p1_0593F.1_g185660 Hydrangea macrophylla HOM05D006385 ORTHO05D007948 1.4e-69 266.5 242 59.5
Prupe.1G522500 Prunus persica HOM05D006385 ORTHO05D007948 1.4e-69 266.5 240 60.4
AUR62018967 Chenopodium quinoa HOM05D006385 ORTHO05D007948 1.5e-68 263.1 243 58.8
AUR62027809 Chenopodium quinoa HOM05D006385 ORTHO05D007948 1.5e-68 263.1 243 58.8
MD15G1373900 Malus domestica HOM05D006385 ORTHO05D007948 7.6e-68 260.8 243 59.3
GSVIVG01009079001 Vitis vinifera HOM05D006385 ORTHO05D007948 7.6e-68 260.8 242 58.3
Aqoxy3G02613 Aquilegia oxysepala HOM05D006385 ORTHO05D007948 2.2e-67 259.2 241 58.1
TWI56G0191 Tripterygium wilfordii HOM05D006385 ORTHO05D007948 2.2e-67 259.2 242 57.9
Atru.chr13.1121 Acer truncatum HOM05D006385 ORTHO05D007948 3.8e-67 258.5 241 57.7
Manes.18G064300 Manihot esculenta HOM05D006385 ORTHO05D007948 3.8e-67 258.5 241 57.7
Nitab4.5_0010488g0040 Nicotiana tabacum HOM05D006385 ORTHO05D007948 6.4e-67 257.7 238 58.0
Actinidia37405 Actinidia chinensis HOM05D006385 ORTHO05D007948 1.1e-66 256.9 228 58.8
Eucgr.F00373 Eucalyptus grandis HOM05D006385 ORTHO05D007948 1.4e-66 256.5 242 58.3
Actinidia33123 Actinidia chinensis HOM05D006385 ORTHO05D007948 3.2e-66 255.4 228 58.3
EL10Ac1g01150 Beta vulgaris HOM05D006385 ORTHO05D007948 5.4e-66 254.6 243 57.2
TAR629G0260 Trochodendron aralioides HOM05D006385 ORTHO05D007948 7.1e-66 254.2 242 55.4
CSS0041418 Camellia sinensis var. sinensis HOM05D006385 ORTHO05D007948 2.1e-65 252.7 242 56.2
CiPaw.16G033200 Carya illinoinensis HOM05D006385 ORTHO05D007948 3.5e-65 251.9 242 57.0
DCAR_012886 Daucus carota HOM05D006385 ORTHO05D007948 3.5e-65 251.9 242 55.8
CAN.G857.10 Capsicum annuum HOM05D006385 ORTHO05D007948 4.6e-65 251.5 242 56.2
Ciclev10001685m.g Citrus clementina HOM05D006385 ORTHO05D007948 4.6e-65 251.5 242 56.2
Potri.005G161900 Populus trichocarpa HOM05D006385 ORTHO05D007948 4.6e-65 251.5 241 55.2
Duzib093G1818 Durio zibethinus HOM05D006385 ORTHO05D007948 7.8e-65 250.8 242 56.2
FAN04G2677 Fragaria x ananassa HOM05D006385 ORTHO05D007948 7.8e-65 250.8 128 96.9
Peaxi162Scf00030g02222 Petunia axillaris HOM05D006385 ORTHO05D007948 1.0e-64 250.4 242 55.4
Nn3g19220 Nelumbo nucifera HOM05D006385 ORTHO05D007948 1.7e-64 249.6 242 56.2
PGSC0003DMG400030834 Solanum tuberosum HOM05D006385 ORTHO05D007948 1.7e-64 249.6 242 56.6
Glyma.14G177200 Glycine max HOM05D006385 ORTHO05D007948 2.3e-64 249.2 242 56.2
PSO063G4930 Papaver somniferum HOM05D006385 ORTHO05D007948 2.3e-64 249.2 242 56.2
PGR042G2954 Punica granatum HOM05D006385 ORTHO05D007948 3.0e-64 248.8 242 55.0
CSS0028326 Camellia sinensis var. sinensis HOM05D006385 ORTHO05D007948 3.9e-64 248.4 242 55.8
CsaV3_3G047650 Cucumis sativus L. HOM05D006385 ORTHO05D007948 5.1e-64 248.1 243 54.7
Sopen04g029620 Solanum pennellii HOM05D006385 ORTHO05D007948 6.6e-64 247.7 242 56.2
Thecc.08G102700 Theobroma cacao HOM05D006385 ORTHO05D007948 8.6e-64 247.3 242 56.2
CSS0032215 Camellia sinensis var. sinensis HOM05D006385 ORTHO05D007948 1.9e-63 246.1 242 55.8
Sed0018010 Sechium edule HOM05D006385 ORTHO05D007948 1.9e-63 246.1 243 53.9
CANSAT25G3491 Cannabis sativa HOM05D006385 ORTHO05D007948 2.5e-63 245.7 242 54.5
Phvul.008G176700 Phaseolus vulgaris HOM05D006385 ORTHO05D007948 2.5e-63 245.7 242 55.0
Ah.05g169700 Amaranthus hybridus HOM05D006385 ORTHO05D007948 3.3e-63 245.4 243 55.1
Glyma.02G209000 Glycine max HOM05D006385 ORTHO05D007948 3.3e-63 245.4 242 55.4
Gorai.010G038200 Gossypium raimondii HOM05D006385 ORTHO05D007948 4.3e-63 245.0 242 55.0
Solyc04g074640.4 Solanum lycopersicum HOM05D006385 ORTHO05D007948 4.3e-63 245.0 242 55.0
Ca_05312_v3 Cicer arietinum L. HOM05D006385 ORTHO05D007948 7.3e-63 244.2 241 53.5
COL.COLO4_12014 Corchorus olitorius HOM05D006385 ORTHO05D007948 9.6e-63 243.8 243 54.7
Lalb_Chr17g0344281 Lupinus albus HOM05D006385 ORTHO05D007948 1.2e-62 243.4 242 55.4
PSO782G1429 Papaver somniferum HOM05D006385 ORTHO05D007948 1.2e-62 243.4 242 55.4
Sc23g0000390 Simmondsia chinensis HOM05D006385 ORTHO05D007948 1.2e-62 243.4 240 54.2
QL02p002481 Quercus lobata HOM05D006385 ORTHO05D007948 2.1e-62 242.7 239 54.8
Migut.C00083 Erythranthe guttata HOM05D006385 ORTHO05D007948 2.8e-62 242.3 240 55.0
Medtr5g064610 Medicago truncatula HOM05D006385 ORTHO05D007948 2.8e-62 242.3 242 54.1
VMungo0647G2510 Vigna mungo HOM05D006385 ORTHO05D007948 2.8e-62 242.3 242 54.5
Cfa017889 Carpinus fangiana HOM05D006385 ORTHO05D007948 3.6e-62 241.9 244 54.1
ECA247G1006 Erigeron canadensis HOM05D006385 ORTHO05D007948 4.7e-62 241.5 240 54.6
Rhsim07G0205000 Rhododendron simsii HOM05D006385 ORTHO05D007948 6.2e-62 241.1 243 53.5
THA.LOC104813110 Tarenaya hassleriana HOM05D006385 ORTHO05D007948 1.1e-61 240.4 241 53.5
Gohir.D06G034700 Gossypium hirsutum HOM05D006385 ORTHO05D007948 1.4e-61 240.0 242 54.5
TPR.G31376 Trifolium pratense HOM05D006385 ORTHO05D007948 2.4e-61 239.2 241 53.5
Gohir.A06G033800 Gossypium hirsutum HOM05D006385 ORTHO05D007948 3.1e-61 238.8 242 53.7
Nitab4.5_0000786g0090 Nicotiana tabacum HOM05D006385 ORTHO05D007948 3.1e-61 238.8 242 55.0
SalBow7G0771 Salvia bowleyana HOM05D006385 ORTHO05D007948 3.1e-61 238.8 242 52.1
MSTRG.24988 Avicennia marina HOM05D006385 ORTHO05D007948 6.9e-61 237.7 241 53.9
QL02p002520 Quercus lobata HOM05D006385 ORTHO05D007948 6.9e-61 237.7 239 55.2
Lj4A97T74 Lonicera japonica HOM05D006385 ORTHO05D007948 9.0e-61 237.3 240 54.2
vmacro04711 Vaccinium macrocarpon HOM05D006385 ORTHO05D007948 9.0e-61 237.3 279 49.5
BcaC01g04743 Brassica carinata HOM05D006385 ORTHO05D007948 2.0e-60 236.1 241 53.5
C03p34260 Brassica napus HOM05D006385 ORTHO05D007948 2.0e-60 236.1 241 53.5
BolC3t15735H Brassica oleracea HOM05D006385 ORTHO05D007948 2.0e-60 236.1 241 53.5
Carub.0006s2759 Capsella rubella HOM05D006385 ORTHO05D007948 2.0e-60 236.1 241 53.9
ATR0829G184 Amborella trichopoda HOM05D006385 ORTHO05D007948 3.4e-60 235.3 241 52.7
AT4G09010 Arabidopsis thaliana HOM05D006385 ORTHO05D007948 7.6e-60 234.2 241 53.9
A03p28350 Brassica napus HOM05D006385 ORTHO05D007948 9.9e-60 233.8 241 53.1
HPP92_021090 Vanilla planifolia HOM05D006385 ORTHO05D007948 9.9e-60 233.8 240 52.1
Sp6g08630 Schrenkiella parvula HOM05D006385 ORTHO05D007948 1.3e-59 233.4 241 52.7
arahy.Tifrunner.gnm1.ann1.5I6DN4 Arachis hypogaea HOM05D006385 ORTHO05D007948 2.2e-59 232.6 242 52.9
arahy.Tifrunner.gnm1.ann1.A6MVZL Arachis hypogaea HOM05D006385 ORTHO05D007948 2.2e-59 232.6 242 52.9
BcaB01g02829 Brassica carinata HOM05D006385 ORTHO05D007948 2.2e-59 232.6 241 53.5
Thhalv10028739m.g Eutrema salsugineum HOM05D006385 ORTHO05D007948 2.2e-59 232.6 241 52.7
Lj1g0021451 Lotus japonicus HOM05D006385 ORTHO05D007948 2.2e-59 232.6 242 52.1
Sabra05G0122400 Salix brachista HOM05D000076 ORTHO05D007948 2.2e-59 232.6 170 68.8
Lsat_1_v5_gn_1_3240 Lactuca sativa HOM05D006385 ORTHO05D007948 2.9e-59 232.3 242 52.5
BraA03t12039Z Brassica rapa HOM05D006385 ORTHO05D007948 3.8e-59 231.9 241 52.7
Hund16889 Selenicereus undatus HOM05D006385 ORTHO05D007948 3.8e-59 231.9 256 52.0
Haze_18272 Corylus avellana HOM05D006385 ORTHO05D007948 4.9e-59 231.5 239 52.7
Haze_18276 Corylus avellana HOM05D006385 ORTHO05D007948 4.9e-59 231.5 239 52.7
unitig_578.g16554 Utricularia gibba HOM05D006385 ORTHO05D007948 6.4e-59 231.1 233 53.6
Aa31LG9G14680 Aethionema arabicum HOM05D006385 ORTHO05D007948 8.4e-59 230.7 241 51.5
AL6G41510 Arabidopsis lyrata HOM05D006385 ORTHO05D007948 8.4e-59 230.7 241 52.7
HanXRQChr05g0149631 Helianthus annuus HOM05D006385 ORTHO05D007948 4.2e-58 228.4 242 50.8
CARHR260020 Cardamine hirsuta HOM05D006385 ORTHO05D007948 5.4e-58 228.0 241 51.0
ClCG11G014260 Citrullus lanatus HOM05D006385 ORTHO05D007948 7.1e-58 227.6 302 45.4
Os04g0602100 Oryza sativa ssp. japonica HOM05D006385 ORTHO05D007948 2.7e-57 225.7 240 52.5
CDE11G0329 Ceratophyllum demersum HOM05D006385 ORTHO05D007948 4.6e-57 224.9 222 54.1
Zm00001eb071800 Zea mays HOM05D006385 ORTHO05D007948 1.7e-56 223.0 239 51.0
FAN04G3219 Fragaria x ananassa HOM05D006385 ORTHO05D007948 5.6e-47 191.4 116 81.9
Cc10_g06720 Coffea canephora HOM05D006385 ORTHO05D007948 8.1e-46 187.6 205 50.2
FAN04G2124 Fragaria x ananassa HOM05D006385 ORTHO05D007948 4.0e-45 185.3 96 96.9
SGA_v2.0_scaffold69G23149 Striga asiatica HOM05D006385 ORTHO05D007948 4.0e-45 185.3 213 46.9
AagrBONN_evm.TU.Sc2ySwM_368.1614 Anthoceros agrestis HOM05D006385 ORTHO05D007948 2.4e-42 176.0 229 42.8
SMO331G0009 Selaginella moellendorffii HOM05D006385 ORTHO05D007948 7.1e-42 174.5 243 42.0
Oeu029745.1 Olea europaea HOM05D006385 ORTHO05D007948 2.7e-41 172.6 226 45.1
Pp3c1_18860 Physcomitrium patens HOM05D006385 ORTHO05D007948 2.7e-41 172.6 233 42.9
Pp3c2_15430 Physcomitrium patens HOM05D006385 ORTHO05D007948 1.0e-40 170.6 233 42.1
CBR_g39625 Chara braunii HOM05D006385 ORTHO05D007948 3.0e-40 169.1 234 44.0
vmacro04724 Vaccinium macrocarpon HOM05D006385 ORTHO05D007948 1.1e-37 160.6 204 44.6
Mapoly0019s0014 Marchantia polymorpha HOM05D006385 ORTHO05D007948 7.6e-36 154.5 228 38.6
Cpa.g.sc36.176 Carica papaya HOM05D006385 ORTHO05D007948 1.0e-32 144.1 190 42.6
Dinv44802 Davidia involucrata HOM05D006385 ORTHO05D007948 1.1e-29 134.0 78 83.3
Dinv07071 Davidia involucrata HOM05D006385 ORTHO05D007948 2.9e-27 125.9 170 42.9
RcHm_v2.0_Chr7g0242541 Rosa chinensis HOM05D006385 ORTHO05D007948 1.6e-25 120.2 188 42.6
FAN04G3079 Fragaria x ananassa HOM05D006385 ORTHO05D007948 1.3e-24 117.1 63 92.1
MELO3C003559.2 Cucumis melo HOM05D006385 ORTHO05D007948 1.5e-23 113.6 162 40.1
RcHm_v2.0_Chr7g0242431 Rosa chinensis HOM05D006385 ORTHO05D007948 5.9e-12 75.1 39 89.7
SGA_v2.0_scaffold105G30294 Striga asiatica HOM05D006385 ORTHO05D007948 6.5e-11 71.6 44 75.0
Cc10_g06730 Coffea canephora HOM05D006385 ORTHO05D007948 1.2e-09 67.4 37 86.5
Psat2g069720 Pisum sativum HOM05D006385 ORTHO05D007948 2.3e-08 63.2 34 76.5
Lsat_1_v5_gn_3_128800 Lactuca sativa HOM05D006385 ORTHO05D007948 7.4e-07 58.2 129 34.9
Lsat_1_v5_gn_5_37701 Lactuca sativa HOM05D006385 ORTHO05D007948 3.7e-06 55.8 34 73.5


User provided reference genes

Program Settings