Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0242431 Rosa chinensis HOM05D006385 ORTHO05D007948 2.6e-52 208.4 102 100.0
RcHm_v2.0_Chr7g0242391 Rosa chinensis HOM05D006385 ORTHO05D007948 3.4e-31 138.3 101 76.2
FvH4_5g36620 Fragaria vesca HOM05D006385 ORTHO05D007948 2.8e-30 135.2 101 74.3
FAN04G3219 Fragaria x ananassa HOM05D006385 ORTHO05D007948 6.3e-30 134.0 101 73.3
FAN08G3484 Fragaria x ananassa HOM05D000076 ORTHO05D002730 6.3e-30 134.0 101 73.3
Nitab4.5_0000786g0090 Nicotiana tabacum HOM05D006385 ORTHO05D007948 2.4e-29 132.1 101 71.3
Rhsim07G0205000 Rhododendron simsii HOM05D006385 ORTHO05D007948 3.1e-29 131.7 98 70.4
AUR62027809 Chenopodium quinoa HOM05D006385 ORTHO05D007948 1.2e-28 129.8 101 71.3
TWI56G0191 Tripterygium wilfordii HOM05D006385 ORTHO05D007948 1.2e-28 129.8 98 71.4
Peaxi162Scf00030g02222 Petunia axillaris HOM05D006385 ORTHO05D007948 2.0e-28 129.0 101 69.3
Prupe.1G522500 Prunus persica HOM05D006385 ORTHO05D007948 2.0e-28 129.0 101 70.3
GSVIVG01009079001 Vitis vinifera HOM05D006385 ORTHO05D007948 2.0e-28 129.0 98 69.4
AUR62018967 Chenopodium quinoa HOM05D006385 ORTHO05D007948 2.7e-28 128.6 101 70.3
Lj4A97T74 Lonicera japonica HOM05D006385 ORTHO05D007948 3.5e-28 128.3 101 69.3
MD15G1373900 Malus domestica HOM05D006385 ORTHO05D007948 3.5e-28 128.3 101 71.3
Nitab4.5_0010488g0040 Nicotiana tabacum HOM05D006385 ORTHO05D007948 3.5e-28 128.3 106 66.0
Ciclev10001685m.g Citrus clementina HOM05D006385 ORTHO05D007948 4.5e-28 127.9 98 69.4
Cc10_g06720 Coffea canephora HOM05D006385 ORTHO05D007948 4.5e-28 127.9 98 69.4
EL10Ac1g01150 Beta vulgaris HOM05D006385 ORTHO05D007948 7.7e-28 127.1 101 69.3
CSS0028326 Camellia sinensis var. sinensis HOM05D006385 ORTHO05D007948 1.0e-27 126.7 98 70.4
Cpa.g.sc36.176 Carica papaya HOM05D006385 ORTHO05D007948 1.0e-27 126.7 98 69.4
Hma1.2p1_0593F.1_g185660 Hydrangea macrophylla HOM05D006385 ORTHO05D007948 1.0e-27 126.7 98 69.4
Sc23g0000390 Simmondsia chinensis HOM05D006385 ORTHO05D007948 1.0e-27 126.7 98 70.4
PGSC0003DMG400030834 Solanum tuberosum HOM05D006385 ORTHO05D007948 1.0e-27 126.7 101 68.3
vmacro04711 Vaccinium macrocarpon HOM05D006385 ORTHO05D007948 1.0e-27 126.7 98 68.4
Atru.chr13.1121 Acer truncatum HOM05D006385 ORTHO05D007948 1.3e-27 126.3 101 68.3
CAN.G857.10 Capsicum annuum HOM05D006385 ORTHO05D007948 1.3e-27 126.3 101 68.3
PGR042G2954 Punica granatum HOM05D006385 ORTHO05D007948 1.3e-27 126.3 98 68.4
CiPaw.16G033200 Carya illinoinensis HOM05D006385 ORTHO05D007948 1.7e-27 125.9 101 69.3
Lj1g0021451 Lotus japonicus HOM05D006385 ORTHO05D007948 1.7e-27 125.9 98 69.4
Manes.18G064300 Manihot esculenta HOM05D006385 ORTHO05D007948 1.7e-27 125.9 98 68.4
Aqoxy3G02613 Aquilegia oxysepala HOM05D006385 ORTHO05D007948 2.3e-27 125.6 101 69.3
Solyc04g074640.4 Solanum lycopersicum HOM05D006385 ORTHO05D007948 2.3e-27 125.6 101 67.3
CSS0041418 Camellia sinensis var. sinensis HOM05D006385 ORTHO05D007948 3.8e-27 124.8 98 69.4
TAR629G0260 Trochodendron aralioides HOM05D006385 ORTHO05D007948 3.8e-27 124.8 100 68.0
Sed0018010 Sechium edule HOM05D006385 ORTHO05D007948 5.0e-27 124.4 98 68.4
Sopen04g029620 Solanum pennellii HOM05D006385 ORTHO05D007948 5.0e-27 124.4 101 67.3
Cfa017889 Carpinus fangiana HOM05D006385 ORTHO05D007948 6.5e-27 124.0 98 68.4
Ca_05312_v3 Cicer arietinum L. HOM05D006385 ORTHO05D007948 6.5e-27 124.0 101 68.3
ECA247G1006 Erigeron canadensis HOM05D006385 ORTHO05D007948 6.5e-27 124.0 101 68.3
Nn3g19220 Nelumbo nucifera HOM05D006385 ORTHO05D007948 8.6e-27 123.6 98 69.4
THA.LOC104813110 Tarenaya hassleriana HOM05D006385 ORTHO05D007948 1.1e-26 123.2 101 67.3
arahy.Tifrunner.gnm1.ann1.5I6DN4 Arachis hypogaea HOM05D006385 ORTHO05D007948 1.5e-26 122.9 98 67.3
arahy.Tifrunner.gnm1.ann1.A6MVZL Arachis hypogaea HOM05D006385 ORTHO05D007948 1.5e-26 122.9 98 67.3
Medtr5g064610 Medicago truncatula HOM05D006385 ORTHO05D007948 1.5e-26 122.9 101 67.3
Carub.0006s2759 Capsella rubella HOM05D006385 ORTHO05D007948 1.9e-26 122.5 101 68.3
Eucgr.F00373 Eucalyptus grandis HOM05D006385 ORTHO05D007948 1.9e-26 122.5 98 67.3
TPR.G31376 Trifolium pratense HOM05D006385 ORTHO05D007948 1.9e-26 122.5 101 67.3
AL6G41510 Arabidopsis lyrata HOM05D006385 ORTHO05D007948 2.5e-26 122.1 101 67.3
CARHR260020 Cardamine hirsuta HOM05D006385 ORTHO05D007948 3.3e-26 121.7 101 66.3
Lsat_1_v5_gn_1_3240 Lactuca sativa HOM05D006385 ORTHO05D007948 3.3e-26 121.7 101 67.3
Lalb_Chr17g0344281 Lupinus albus HOM05D006385 ORTHO05D007948 4.2e-26 121.3 101 67.3
Haze_18272 Corylus avellana HOM05D006385 ORTHO05D007948 5.5e-26 120.9 98 65.3
Haze_18276 Corylus avellana HOM05D006385 ORTHO05D007948 5.5e-26 120.9 98 65.3
Potri.005G161900 Populus trichocarpa HOM05D006385 ORTHO05D007948 5.5e-26 120.9 101 64.4
CsaV3_3G047650 Cucumis sativus L. HOM05D006385 ORTHO05D007948 7.2e-26 120.6 98 65.3
Duzib093G1818 Durio zibethinus HOM05D006385 ORTHO05D007948 9.5e-26 120.2 101 64.4
HanXRQChr05g0149631 Helianthus annuus HOM05D006385 ORTHO05D007948 9.5e-26 120.2 101 65.3
Sabra05G0122400 Salix brachista HOM05D000076 ORTHO05D007948 9.5e-26 120.2 101 63.4
Ah.05g169700 Amaranthus hybridus HOM05D006385 ORTHO05D007948 1.2e-25 119.8 98 66.3
ATR0829G184 Amborella trichopoda HOM05D006385 ORTHO05D007948 1.2e-25 119.8 101 63.4
Sp6g08630 Schrenkiella parvula HOM05D006385 ORTHO05D007948 1.2e-25 119.8 98 65.3
SGA_v2.0_scaffold69G23149 Striga asiatica HOM05D006385 ORTHO05D007948 1.2e-25 119.8 101 65.3
HPP92_021090 Vanilla planifolia HOM05D006385 ORTHO05D007948 1.2e-25 119.8 98 64.3
VMungo0647G2510 Vigna mungo HOM05D006385 ORTHO05D007948 1.2e-25 119.8 101 65.3
AT4G09010 Arabidopsis thaliana HOM05D006385 ORTHO05D007948 1.6e-25 119.4 101 66.3
CSS0032215 Camellia sinensis var. sinensis HOM05D006385 ORTHO05D007948 1.6e-25 119.4 98 69.4
BcaB01g02829 Brassica carinata HOM05D006385 ORTHO05D007948 2.1e-25 119.0 98 65.3
PSO782G1429 Papaver somniferum HOM05D006385 ORTHO05D007948 2.1e-25 119.0 98 68.4
BcaC01g04743 Brassica carinata HOM05D006385 ORTHO05D007948 2.8e-25 118.6 101 64.4
A03p28350 Brassica napus HOM05D006385 ORTHO05D007948 2.8e-25 118.6 98 64.3
BraA03t12039Z Brassica rapa HOM05D006385 ORTHO05D007948 2.8e-25 118.6 98 64.3
Phvul.008G176700 Phaseolus vulgaris HOM05D006385 ORTHO05D007948 2.8e-25 118.6 101 64.4
COL.COLO4_12014 Corchorus olitorius HOM05D006385 ORTHO05D007948 3.6e-25 118.2 101 64.4
Thhalv10028739m.g Eutrema salsugineum HOM05D006385 ORTHO05D007948 3.6e-25 118.2 98 64.3
unitig_578.g16554 Utricularia gibba HOM05D006385 ORTHO05D007948 3.6e-25 118.2 101 64.4
SalBow7G0771 Salvia bowleyana HOM05D006385 ORTHO05D007948 4.7e-25 117.9 98 62.2
Aa31LG9G14680 Aethionema arabicum HOM05D006385 ORTHO05D007948 6.1e-25 117.5 101 63.4
CANSAT25G3491 Cannabis sativa HOM05D006385 ORTHO05D007948 6.1e-25 117.5 101 64.4
C03p34260 Brassica napus HOM05D006385 ORTHO05D007948 8.0e-25 117.1 101 63.4
BolC3t15735H Brassica oleracea HOM05D006385 ORTHO05D007948 8.0e-25 117.1 101 63.4
PSO063G4930 Papaver somniferum HOM05D006385 ORTHO05D007948 8.0e-25 117.1 98 67.3
Migut.C00083 Erythranthe guttata HOM05D006385 ORTHO05D007948 1.4e-24 116.3 98 63.3
Glyma.14G177200 Glycine max HOM05D006385 ORTHO05D007948 1.4e-24 116.3 101 65.3
QL02p002481 Quercus lobata HOM05D006385 ORTHO05D007948 1.4e-24 116.3 98 62.2
CDE11G0329 Ceratophyllum demersum HOM05D006385 ORTHO05D007948 2.3e-24 115.5 101 65.3
DCAR_012886 Daucus carota HOM05D006385 ORTHO05D007948 2.3e-24 115.5 101 64.4
MSTRG.24988 Avicennia marina HOM05D006385 ORTHO05D007948 3.0e-24 115.2 98 64.3
Glyma.02G209000 Glycine max HOM05D006385 ORTHO05D007948 3.0e-24 115.2 101 64.4
Gohir.D06G034700 Gossypium hirsutum HOM05D006385 ORTHO05D007948 4.0e-24 114.8 101 62.4
Gorai.010G038200 Gossypium raimondii HOM05D006385 ORTHO05D007948 4.0e-24 114.8 101 62.4
Thecc.08G102700 Theobroma cacao HOM05D006385 ORTHO05D007948 8.9e-24 113.6 101 64.4
Gohir.A06G033800 Gossypium hirsutum HOM05D006385 ORTHO05D007948 1.2e-23 113.2 101 61.4
Hund16889 Selenicereus undatus HOM05D006385 ORTHO05D007948 2.0e-23 112.5 121 57.0
vmacro04724 Vaccinium macrocarpon HOM05D006385 ORTHO05D007948 2.0e-23 112.5 99 60.6
Dinv07071 Davidia involucrata HOM05D006385 ORTHO05D007948 3.4e-23 111.7 100 64.0
QL02p002520 Quercus lobata HOM05D006385 ORTHO05D007948 3.4e-23 111.7 98 62.2
Zm00001eb071800 Zea mays HOM05D006385 ORTHO05D007948 5.7e-23 110.9 101 61.4
Oeu029745.1 Olea europaea HOM05D006385 ORTHO05D007948 7.5e-23 110.5 119 56.3
Os04g0602100 Oryza sativa ssp. japonica HOM05D006385 ORTHO05D007948 2.8e-22 108.6 98 62.2
ClCG11G014260 Citrullus lanatus HOM05D006385 ORTHO05D007948 3.1e-21 105.1 157 45.2
MELO3C003559.2 Cucumis melo HOM05D006385 ORTHO05D007948 4.1e-21 104.8 88 64.8
Pp3c2_15430 Physcomitrium patens HOM05D006385 ORTHO05D007948 5.0e-19 97.8 98 52.0
Pp3c1_18860 Physcomitrium patens HOM05D006385 ORTHO05D007948 1.9e-18 95.9 98 53.1
SMO331G0009 Selaginella moellendorffii HOM05D006385 ORTHO05D007948 1.0e-16 90.1 98 49.0
Mapoly0019s0014 Marchantia polymorpha HOM05D006385 ORTHO05D007948 2.3e-16 89.0 97 54.6
RcHm_v2.0_Chr7g0242541 Rosa chinensis HOM05D006385 ORTHO05D007948 5.2e-16 87.8 101 55.4
FAN04G2677 Fragaria x ananassa HOM05D006385 ORTHO05D007948 9.2e-13 77.0 39 92.3
Actinidia37405 Actinidia chinensis HOM05D006385 ORTHO05D007948 2.0e-12 75.9 68 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1614 Anthoceros agrestis HOM05D006385 ORTHO05D007948 2.0e-12 75.9 98 43.9
RcHm_v2.0_Chr7g0242491 Rosa chinensis HOM05D006385 ORTHO05D007948 2.0e-12 75.9 39 89.7
Actinidia33123 Actinidia chinensis HOM05D006385 ORTHO05D007948 6.0e-12 74.3 68 60.3
Psat2g069720 Pisum sativum HOM05D006385 ORTHO05D007948 3.0e-11 72.0 41 87.8
FAN04G2113 Fragaria x ananassa HOM05D000076 ORTHO05D002730 6.6e-11 70.9 35 94.3
CBR_g39625 Chara braunii HOM05D006385 ORTHO05D007948 2.8e-09 65.5 99 41.4
Dinv44803 Davidia involucrata HOM05D006385 ORTHO05D007948 1.4e-08 63.2 38 78.9


User provided reference genes

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