Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0242411 Rosa chinensis HOM05D012044 ORTHO05D035845 1.8e-216 756.1 529 100.0
RcHm_v2.0_Chr7g0242471 Rosa chinensis HOM05D012044 ORTHO05D035845 7.5e-175 617.8 599 78.8
FvH4_5g36310 Fragaria vesca HOM05D012044 ORTHO05D009232 3.7e-49 200.3 544 51.1
RcHm_v2.0_Chr7g0243171 Rosa chinensis HOM05D012044 ORTHO05D009232 1.6e-47 194.9 535 41.7
FAN08G2061 Fragaria x ananassa HOM05D000097 ORTHO05D009232 7.8e-47 192.6 533 50.7
RcHm_v2.0_Chr7g0242551 Rosa chinensis HOM05D000097 ORTHO05D000041 2.3e-46 191.0 597 44.6
RcHm_v2.0_Chr7g0243041 Rosa chinensis HOM05D012044 ORTHO05D009232 1.1e-45 188.7 527 41.7
FAN18G2961 Fragaria x ananassa HOM05D012044 ORTHO05D035845 2.1e-44 184.5 221 51.1
FAN28G0864 Fragaria x ananassa HOM05D000097 ORTHO05D000041 8.9e-43 179.1 394 39.6
FAN04G0837 Fragaria x ananassa HOM05D012044 ORTHO05D009232 3.4e-42 177.2 589 40.4
FvH4_1g02950 Fragaria vesca HOM05D000097 ORTHO05D000041 4.9e-41 173.3 394 38.8
FAN18G2502 Fragaria x ananassa HOM05D000097 ORTHO05D000041 3.2e-40 170.6 394 36.8
FAN08G0420 Fragaria x ananassa HOM05D000097 ORTHO05D009232 2.7e-39 167.5 369 37.7
FAN18G4446 Fragaria x ananassa HOM05D000097 ORTHO05D000041 7.8e-39 166.0 595 39.8
FAN04G1606 Fragaria x ananassa HOM05D000097 ORTHO05D000041 2.3e-38 164.5 395 38.0
RcHm_v2.0_Chr7g0242961 Rosa chinensis HOM05D012044 ORTHO05D009232 2.3e-38 164.5 527 48.8
FvH4_5g37090 Fragaria vesca HOM05D000097 ORTHO05D009232 3.0e-38 164.1 579 48.2
FAN13G1601 Fragaria x ananassa HOM05D000097 ORTHO05D000041 6.2e-36 156.4 387 35.4
FAN04G3137 Fragaria x ananassa HOM05D000097 ORTHO05D000041 4.0e-35 153.7 396 36.1
FvH4_5g36321 Fragaria vesca HOM05D000097 ORTHO05D009232 1.4e-27 128.6 244 41.4
FvH4_5g36641 Fragaria vesca HOM05D012044 ORTHO05D009232 2.1e-23 114.8 197 39.1
FAN04G2402 Fragaria x ananassa HOM05D000097 ORTHO05D000041 7.3e-21 106.3 515 39.8
FvH4_5g36360 Fragaria vesca HOM05D012044 ORTHO05D009232 9.6e-21 105.9 323 32.8
FAN04G0035 Fragaria x ananassa HOM05D000097 ORTHO05D009232 1.1e-19 102.4 217 38.7
FAN13G0431 Fragaria x ananassa HOM05D012044 ORTHO05D009232 4.2e-16 90.5 142 39.4
RcHm_v2.0_Chr7g0214651 Rosa chinensis HOM05D000097 ORTHO05D009232 6.0e-15 86.7 113 48.7
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.1e-13 82.4 150 44.7
RcHm_v2.0_Chr7g0237561 Rosa chinensis HOM05D012044 ORTHO05D009232 1.5e-13 82.0 70 58.6
FvH4_5g36330 Fragaria vesca HOM05D000097 ORTHO05D000041 5.6e-13 80.1 252 39.3
RcHm_v2.0_Chr7g0230661 Rosa chinensis HOM05D000097 ORTHO05D000041 2.1e-12 78.2 70 55.7
Prupe.3G237500 Prunus persica HOM05D000097 ORTHO05D000041 4.8e-12 77.0 183 33.3
Prupe.2G082300 Prunus persica HOM05D000097 ORTHO05D000041 3.1e-11 74.3 138 37.0
Prupe.2G080300 Prunus persica HOM05D000097 ORTHO05D000041 2.0e-10 71.6 72 51.4
Prupe.2G080900 Prunus persica HOM05D000097 ORTHO05D000041 2.0e-10 71.6 72 51.4
Prupe.2G081100 Prunus persica HOM05D000097 ORTHO05D000041 2.0e-10 71.6 72 51.4
Prupe.6G131600 Prunus persica HOM05D000097 ORTHO05D000041 5.8e-10 70.1 230 28.7
PSO724G0773 Papaver somniferum HOM05D000097 ORTHO05D000041 9.9e-10 69.3 141 35.5
COL.COLO4_30951 Corchorus olitorius HOM05D000097 ORTHO05D000041 4.9e-09 67.0 214 30.8
Medtr2g438740 Medicago truncatula HOM05D000097 ORTHO05D000041 4.9e-09 67.0 232 30.2
Dinv25825 Davidia involucrata HOM05D000097 ORTHO05D000041 8.4e-09 66.2 307 24.4
QL11p015595 Quercus lobata HOM05D000097 ORTHO05D000041 8.4e-09 66.2 132 38.6
FAN18G2974 Fragaria x ananassa HOM05D012044 ORTHO05D202856 1.9e-08 65.1 75 48.0
FAN28G0875 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.9e-08 65.1 158 34.2
QL11p015433 Quercus lobata HOM05D000097 ORTHO05D000041 1.9e-08 65.1 132 37.9
PSO732G0282 Papaver somniferum HOM05D000097 ORTHO05D000041 5.4e-08 63.5 108 39.8
TWI75G0598 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 1.2e-07 62.4 123 34.1
GSVIVG01026533001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.2e-07 62.4 102 46.1
Dinv03567 Davidia involucrata HOM05D000097 ORTHO05D000041 1.6e-07 62.0 212 28.8
Dinv05037 Davidia involucrata HOM05D000097 ORTHO05D000041 1.6e-07 62.0 212 28.8
Prupe.2G082900 Prunus persica HOM05D000097 ORTHO05D000041 1.6e-07 62.0 115 38.3
CiPaw.01G104300 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.1e-07 61.6 133 33.1
Haze_05298 Corylus avellana HOM05D000097 ORTHO05D000041 2.1e-07 61.6 153 28.8
TWI15G0307 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 2.1e-07 61.6 168 31.0
Dinv07264 Davidia involucrata HOM05D000097 ORTHO05D000041 2.7e-07 61.2 134 32.1
FvH4_1g20460 Fragaria vesca HOM05D000097 ORTHO05D000041 2.7e-07 61.2 136 35.3
PSO675G1274 Papaver somniferum HOM05D000097 ORTHO05D000041 3.5e-07 60.8 149 29.5
QL11p015452 Quercus lobata HOM05D000097 ORTHO05D000041 3.5e-07 60.8 133 36.1
QL11p015610 Quercus lobata HOM05D000097 ORTHO05D000041 3.5e-07 60.8 133 36.1
CiPaw.01G097000 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.6e-07 60.5 155 29.7
Dinv03651 Davidia involucrata HOM05D000097 ORTHO05D000041 4.6e-07 60.5 82 40.2
Hma1.2p1_0541F.1_g174750 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 4.6e-07 60.5 135 31.1
MD17G1077100 Malus domestica HOM05D000097 ORTHO05D000041 4.6e-07 60.5 78 41.0
Prupe.3G237400 Prunus persica HOM05D000097 ORTHO05D009232 4.6e-07 60.5 112 35.7
RcHm_v2.0_Chr1g0338991 Rosa chinensis HOM05D000097 ORTHO05D000041 4.6e-07 60.5 75 41.3
FAN19G2679 Fragaria x ananassa HOM05D000097 ORTHO05D000041 6.0e-07 60.1 136 34.6
Nn5g27907 Nelumbo nucifera HOM05D000097 ORTHO05D000041 7.9e-07 59.7 172 32.6
TAR627G0380 Trochodendron aralioides HOM05D000097 ORTHO05D000041 7.9e-07 59.7 75 44.0
Oeu058931.1 Olea europaea HOM05D000097 ORTHO05D000041 1.0e-06 59.3 75 42.7
Oeu060648.2 Olea europaea HOM05D000097 ORTHO05D000041 1.0e-06 59.3 81 37.0
CiPaw.01G096800 Carya illinoinensis HOM05D000097 ORTHO05D009232 1.3e-06 58.9 95 38.9
Haze_05323 Corylus avellana HOM05D000097 ORTHO05D000041 1.3e-06 58.9 137 34.3
MD00G1011900 Malus domestica HOM05D000097 ORTHO05D000041 1.3e-06 58.9 66 48.5
PSO210G2208 Papaver somniferum HOM05D000097 ORTHO05D000041 1.3e-06 58.9 64 46.9
Actinidia22412 Actinidia chinensis HOM05D000097 ORTHO05D000041 1.8e-06 58.5 130 32.3
Cc09_g05960 Coffea canephora HOM05D000097 ORTHO05D000041 1.8e-06 58.5 78 39.7
Haze_02551 Corylus avellana HOM05D000097 ORTHO05D000041 1.8e-06 58.5 139 31.7
Actinidia22409 Actinidia chinensis HOM05D000097 ORTHO05D000041 2.3e-06 58.2 82 40.2
Aqoxy4G01399 Aquilegia oxysepala HOM05D000264 ORTHO05D000152 2.3e-06 58.2 221 24.9
arahy.Tifrunner.gnm1.ann1.26G3DU Arachis hypogaea HOM05D000097 ORTHO05D000041 2.3e-06 58.2 77 41.6
Haze_01014 Corylus avellana HOM05D000097 ORTHO05D000041 2.3e-06 58.2 134 32.8
Gorai.010G171900 Gossypium raimondii HOM05D000097 ORTHO05D000041 2.3e-06 58.2 130 32.3
MD09G1088100 Malus domestica HOM05D000097 ORTHO05D000041 2.3e-06 58.2 75 41.3
SEGI_02995 Sequoiadendron giganteum HOM05D008502 ORTHO05D010717 2.3e-06 58.2 130 31.5
Duzib160G0926 Durio zibethinus HOM05D000097 ORTHO05D000041 3.0e-06 57.8 73 41.1
FAN04G0188 Fragaria x ananassa HOM05D000097 ORTHO05D009232 3.0e-06 57.8 69 52.2
Haze_03585 Corylus avellana HOM05D000097 ORTHO05D000041 3.9e-06 57.4 127 34.6
Haze_06674 Corylus avellana HOM05D000097 ORTHO05D000041 3.9e-06 57.4 178 25.3
Haze_06676 Corylus avellana HOM05D000097 ORTHO05D000041 3.9e-06 57.4 178 25.3
MD00G1011500 Malus domestica HOM05D000097 ORTHO05D000041 3.9e-06 57.4 66 50.0
QL04p077758 Quercus lobata HOM05D000097 ORTHO05D000041 3.9e-06 57.4 107 34.6
TAR627G0118 Trochodendron aralioides HOM05D000097 ORTHO05D000041 3.9e-06 57.4 67 44.8
Haze_07767 Corylus avellana HOM05D000596 ORTHO05D001497 5.1e-06 57.0 160 32.5
FAN08G2145 Fragaria x ananassa HOM05D000097 ORTHO05D000041 5.1e-06 57.0 68 51.5
FAN13G2188 Fragaria x ananassa HOM05D000097 ORTHO05D009232 5.1e-06 57.0 69 52.2
FAN23G0150 Fragaria x ananassa HOM05D000097 ORTHO05D000041 5.1e-06 57.0 229 26.6
Manes.06G014601 Manihot esculenta HOM05D000097 ORTHO05D000041 5.1e-06 57.0 163 30.1
Prupe.2G082800 Prunus persica HOM05D000097 ORTHO05D000041 5.1e-06 57.0 68 45.6
PGR044G2365 Punica granatum HOM05D000097 ORTHO05D000041 5.1e-06 57.0 71 42.3
Haze_02571 Corylus avellana HOM05D000097 ORTHO05D009232 6.7e-06 56.6 133 29.3
Glyma.15G160600 Glycine max HOM05D000097 ORTHO05D000041 6.7e-06 56.6 76 38.2
Gohir.D06G147500 Gossypium hirsutum HOM05D000097 ORTHO05D000041 6.7e-06 56.6 130 31.5
Lj2A579G12 Lonicera japonica HOM05D000097 ORTHO05D000041 6.7e-06 56.6 110 32.7
QL04p047161 Quercus lobata HOM05D000097 ORTHO05D000041 6.7e-06 56.6 84 38.1
RcHm_v2.0_Chr5g0045551 Rosa chinensis HOM05D000097 ORTHO05D000041 6.7e-06 56.6 230 25.2
Thecc.01G126100 Theobroma cacao HOM05D000097 ORTHO05D000041 6.7e-06 56.6 159 31.4
arahy.Tifrunner.gnm1.ann1.EWC702 Arachis hypogaea HOM05D000097 ORTHO05D000041 8.7e-06 56.2 140 32.1
FAN11G2397 Fragaria x ananassa HOM05D000097 ORTHO05D000041 8.7e-06 56.2 72 34.7
Oeu029788.1 Olea europaea HOM05D000097 ORTHO05D000041 8.7e-06 56.2 67 44.8
Prupe.3G237000 Prunus persica HOM05D000097 ORTHO05D009232 8.7e-06 56.2 75 38.7
Prupe.3G237300 Prunus persica HOM05D000097 ORTHO05D000041 8.7e-06 56.2 75 38.7


User provided reference genes

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