Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0242231 Rosa chinensis HOM05D006997 ORTHO05D008713 1.3e-44 182.6 87 100.0
RcHm_v2.0_Chr3g0492071 Rosa chinensis HOM05D006997 ORTHO05D008713 1.9e-30 135.6 67 95.5
Ciclev10001423m.g Citrus clementina HOM05D006997 ORTHO05D008713 5.4e-30 134.0 67 94.0
Gorai.002G141200 Gossypium raimondii HOM05D006997 ORTHO05D008713 5.4e-30 134.0 67 94.0
FvH4_5g36560 Fragaria vesca HOM05D006997 ORTHO05D008713 9.2e-30 133.3 67 94.0
FAN13G2131 Fragaria x ananassa HOM05D006997 ORTHO05D008713 9.2e-30 133.3 67 94.0
QL02p002364 Quercus lobata HOM05D006997 ORTHO05D008713 9.2e-30 133.3 67 92.5
CiPaw.15G045900 Carya illinoinensis HOM05D006997 ORTHO05D008713 1.2e-29 132.9 67 92.5
FAN18G0565 Fragaria x ananassa HOM05D006997 ORTHO05D008713 2.1e-29 132.1 67 92.5
Manes.02G149000 Manihot esculenta HOM05D006997 ORTHO05D008713 2.1e-29 132.1 67 92.5
PGR042G3947 Punica granatum HOM05D006997 ORTHO05D008713 2.1e-29 132.1 67 92.5
Thecc.08G101800 Theobroma cacao HOM05D006997 ORTHO05D008713 2.1e-29 132.1 67 92.5
GSVIVG01009084001 Vitis vinifera HOM05D006997 ORTHO05D008713 2.1e-29 132.1 67 92.5
Gohir.A01G132700 Gossypium hirsutum HOM05D006997 ORTHO05D008713 2.7e-29 131.7 67 91.0
Actinidia10345 Actinidia chinensis HOM05D006997 ORTHO05D008713 3.5e-29 131.3 67 91.0
FAN08G2563 Fragaria x ananassa HOM05D006997 ORTHO05D008713 3.5e-29 131.3 67 92.5
Haze_18264 Corylus avellana HOM05D006997 ORTHO05D008713 6.0e-29 130.6 67 91.0
Hma1.2p1_1613F.1_g293656 Hydrangea macrophylla HOM05D006997 ORTHO05D008713 6.0e-29 130.6 67 89.6
Potri.002G100700 Populus trichocarpa HOM05D006997 ORTHO05D008713 6.0e-29 130.6 67 91.0
Duzib093G0368 Durio zibethinus HOM05D006997 ORTHO05D008713 7.8e-29 130.2 67 91.0
Actinidia30795 Actinidia chinensis HOM05D006997 ORTHO05D008713 1.0e-28 129.8 67 89.6
MELO3C003553.2 Cucumis melo HOM05D006997 ORTHO05D008713 1.0e-28 129.8 67 89.6
CsaV3_3G047700 Cucumis sativus L. HOM05D006997 ORTHO05D008713 1.0e-28 129.8 67 89.6
Dinv07073 Davidia involucrata HOM05D006997 ORTHO05D008713 1.0e-28 129.8 67 89.6
TWI56G0051 Tripterygium wilfordii HOM05D006997 ORTHO05D008713 1.0e-28 129.8 67 91.0
TAR381G0945 Trochodendron aralioides HOM05D006997 ORTHO05D008713 1.3e-28 129.4 67 89.6
Duzib116G0677 Durio zibethinus HOM05D006997 ORTHO05D008713 1.7e-28 129.0 67 89.6
Os09g0469900 Oryza sativa ssp. japonica HOM05D006997 ORTHO05D008713 1.7e-28 129.0 67 89.6
ClCG11G014320 Citrullus lanatus HOM05D006997 ORTHO05D008713 2.3e-28 128.6 67 86.6
Oeu029744.1 Olea europaea HOM05D006997 ORTHO05D008713 2.3e-28 128.6 67 88.1
Prupe.1G523100 Prunus persica HOM05D006997 ORTHO05D008713 2.3e-28 128.6 67 89.6
Zm00001eb313370 Zea mays HOM05D006997 ORTHO05D008713 2.3e-28 128.6 67 88.1
arahy.Tifrunner.gnm1.ann1.I3UG1J Arachis hypogaea HOM05D006997 ORTHO05D008713 3.0e-28 128.3 70 84.3
ECA247G1028 Erigeron canadensis HOM05D006997 ORTHO05D008713 3.0e-28 128.3 67 88.1
Eucgr.F00379 Eucalyptus grandis HOM05D006997 ORTHO05D008713 3.0e-28 128.3 67 91.0
HanXRQChr02g0039281 Helianthus annuus HOM05D006997 ORTHO05D008713 3.9e-28 127.9 67 86.6
CANSAT54G2489 Cannabis sativa HOM05D006997 ORTHO05D008713 5.1e-28 127.5 67 88.1
Ca_20316_v3 Cicer arietinum L. HOM05D006997 ORTHO05D008713 5.1e-28 127.5 67 86.6
SalBow1G8133 Salvia bowleyana HOM05D006997 ORTHO05D008713 5.1e-28 127.5 67 86.6
TPR.G18644 Trifolium pratense HOM05D006997 ORTHO05D008713 5.1e-28 127.5 67 86.6
Migut.N02878 Erythranthe guttata HOM05D006997 ORTHO05D008713 8.6e-28 126.7 67 86.6
Migut.O00787 Erythranthe guttata HOM05D006997 ORTHO05D008713 8.6e-28 126.7 67 86.6
Glyma.04G099000 Glycine max HOM05D006997 ORTHO05D008713 1.1e-27 126.3 70 85.7
Lalb_Chr08g0242211 Lupinus albus HOM05D006997 ORTHO05D008713 1.1e-27 126.3 68 85.3
MD08G1188600 Malus domestica HOM05D006997 ORTHO05D008713 1.1e-27 126.3 67 88.1
Lj4C96G9 Lonicera japonica HOM05D006997 ORTHO05D008713 1.9e-27 125.6 67 86.6
SGA_v2.0_scaffold28G11904 Striga asiatica HOM05D006997 ORTHO05D008713 1.9e-27 125.6 67 86.6
Lsat_1_v5_gn_1_3100 Lactuca sativa HOM05D006997 ORTHO05D008713 2.5e-27 125.2 67 86.6
MBI02_g10710_MAGBIO Magnolia biondii HOM05D006997 ORTHO05D008713 2.5e-27 125.2 67 86.6
arahy.Tifrunner.gnm1.ann1.R22A6K Arachis hypogaea HOM05D006997 ORTHO05D008713 3.3e-27 124.8 70 82.9
Peaxi162Scf00030g02415 Petunia axillaris HOM05D006997 ORTHO05D008713 3.3e-27 124.8 67 85.1
CAN.G857.15 Capsicum annuum HOM05D006997 ORTHO05D008713 5.6e-27 124.0 67 85.1
Medtr5g099370 Medicago truncatula HOM05D006997 ORTHO05D008713 5.6e-27 124.0 67 83.6
Solyc04g074710.3 Solanum lycopersicum HOM05D006997 ORTHO05D008713 5.6e-27 124.0 67 85.1
Sopen04g029680 Solanum pennellii HOM05D006997 ORTHO05D008713 5.6e-27 124.0 67 85.1
PGSC0003DMG400030838 Solanum tuberosum HOM05D006997 ORTHO05D008713 5.6e-27 124.0 67 85.1
Glyma.06G100700 Glycine max HOM05D006997 ORTHO05D008713 1.2e-26 122.9 67 85.1
VMungo1309G1562 Vigna mungo HOM05D006997 ORTHO05D008713 1.2e-26 122.9 89 70.8
Lj1g0014637 Lotus japonicus HOM05D006997 ORTHO05D008713 1.6e-26 122.5 67 83.6
Aqoxy5G01920 Aquilegia oxysepala HOM05D006997 ORTHO05D008713 2.1e-26 122.1 67 85.1
Phvul.009G033100 Phaseolus vulgaris HOM05D006997 ORTHO05D008713 2.1e-26 122.1 67 85.1
Rhsim06G0078000 Rhododendron simsii HOM05D006997 ORTHO05D008713 2.1e-26 122.1 67 83.6
Nn5g29994 Nelumbo nucifera HOM05D006997 ORTHO05D008713 2.8e-26 121.7 68 86.8
Nitab4.5_0000786g0050 Nicotiana tabacum HOM05D006997 ORTHO05D008713 2.8e-26 121.7 67 83.6
Nitab4.5_0005108g0030 Nicotiana tabacum HOM05D006997 ORTHO05D008713 1.1e-25 119.8 67 82.1
PSO447G0258 Papaver somniferum HOM05D006997 ORTHO05D008713 1.4e-25 119.4 67 82.1
Sed0013982 Sechium edule HOM05D006997 ORTHO05D008713 3.1e-25 118.2 60 90.0
HPP92_005985 Vanilla planifolia HOM05D006997 ORTHO05D008713 3.1e-25 118.2 67 80.6
arahy.Tifrunner.gnm1.ann1.2V06JV Arachis hypogaea HOM05D006997 ORTHO05D008713 4.0e-25 117.9 62 85.5
Cc10_g06680 Coffea canephora HOM05D006997 ORTHO05D008713 5.2e-25 117.5 62 85.5
PSO170G4713 Papaver somniferum HOM05D006997 ORTHO05D008713 5.2e-25 117.5 67 80.6
THA.LOC104806793 Tarenaya hassleriana HOM05D006997 ORTHO05D008713 5.2e-25 117.5 68 75.0
arahy.Tifrunner.gnm1.ann1.50RG73 Arachis hypogaea HOM05D006997 ORTHO05D008713 1.2e-24 116.3 85 68.2
arahy.Tifrunner.gnm1.ann1.M6BDRX Arachis hypogaea HOM05D006997 ORTHO05D008713 1.2e-24 116.3 85 68.2
Atru.chr13.1117 Acer truncatum HOM05D006997 ORTHO05D008713 1.5e-24 115.9 71 80.3
MD15G1376400 Malus domestica HOM05D006997 ORTHO05D008713 2.0e-24 115.5 61 86.9
Pp3c2_7910 Physcomitrium patens HOM05D006997 ORTHO05D008713 8.3e-23 110.2 67 76.1
PSO700G0253 Papaver somniferum HOM05D006997 ORTHO05D008713 1.1e-22 109.8 76 71.1
Mapoly0028s0040 Marchantia polymorpha HOM05D006997 ORTHO05D008713 4.1e-22 107.8 67 73.1
AagrBONN_evm.TU.Sc2ySwM_228.3329 Anthoceros agrestis HOM05D006997 ORTHO05D008713 9.2e-22 106.7 67 71.6
vmacro21291 Vaccinium macrocarpon HOM05D006997 ORTHO05D008713 1.0e-20 103.2 103 52.4
CBR_g19661 Chara braunii HOM05D006997 ORTHO05D008713 1.1e-19 99.8 62 69.4
SHI35102 Sapria himalayana HOM05D006997 ORTHO05D008713 1.1e-19 99.8 72 65.3
PRCOL_00000168 Prasinoderma coloniale HOM05D006997 ORTHO05D008713 3.3e-19 98.2 61 65.6
SMO203G0247 Selaginella moellendorffii HOM05D006997 ORTHO05D008713 8.1e-18 93.6 54 74.1
Cre12.g558400 Chlamydomonas reinhardtii HOM05D006997 ORTHO05D008713 4.9e-15 84.3 66 53.0
arahy.Tifrunner.gnm1.ann1.U0EC22 Arachis hypogaea HOM05D006997 ORTHO05D008713 1.6e-13 79.3 67 61.2
MCO01G675 Micromonas commoda HOM05D006997 ORTHO05D008713 1.7e-12 75.9 67 49.3
CSS0033006 Camellia sinensis var. sinensis HOM05D006997 ORTHO05D008713 1.6e-10 69.3 36 86.1
ATR0684G208 Amborella trichopoda HOM05D006997 ORTHO05D008713 1.4e-09 66.2 36 80.6
Cpa.g.sc36.182 Carica papaya HOM05D006997 ORTHO05D008713 5.3e-09 64.3 32 90.6
Hund26989 Selenicereus undatus HOM05D006997 ORTHO05D008713 1.3e-07 59.7 32 84.4
arahy.Tifrunner.gnm1.ann1.I4BPU4 Arachis hypogaea HOM05D006997 ORTHO05D008713 1.7e-07 59.3 48 60.4
Lj6P211T7 Lonicera japonica HOM05D006997 ORTHO05D008713 3.8e-07 58.2 36 72.2
Lj6P222T9 Lonicera japonica HOM05D006997 ORTHO05D008713 3.8e-07 58.2 36 72.2


User provided reference genes

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