Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 0.0e+00 1144.0 692 100.0
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 1.9e-271 939.1 708 82.1
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-269 933.3 708 81.5
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-269 933.3 708 81.5
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-267 926.0 708 81.4
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.3e-230 801.2 639 80.6
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.9e-133 480.7 744 57.0
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.2e-132 478.0 724 58.4
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 5.1e-131 472.6 798 52.4
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 3.0e-123 446.8 768 50.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 7.1e-117 425.6 779 52.1
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 7.4e-114 415.6 782 47.1
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.1e-112 409.8 692 53.0
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 3.4e-111 406.8 773 49.8
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 8.5e-110 402.1 766 47.1
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.6e-108 396.7 785 48.7
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.0e-107 395.2 813 46.4
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.3e-107 394.0 780 50.1
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.5e-106 391.3 795 49.4
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 4.8e-105 386.3 801 44.8
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 5.3e-104 382.9 772 47.9
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 9.1e-104 382.1 766 48.0
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.2e-103 381.7 685 50.7
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.6e-103 380.6 684 51.3
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 7.7e-103 379.0 774 48.7
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 6.5e-102 375.9 786 46.3
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 8.5e-102 375.6 664 50.8
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 9.4e-101 372.1 764 49.7
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 3.6e-100 370.2 790 47.0
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.6e-100 370.2 724 43.6
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.6e-100 370.2 729 43.5
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.9e-99 366.7 761 48.5
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.1e-98 365.2 786 44.4
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 5.7e-98 362.8 785 44.5
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.4e-98 362.5 781 46.2
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.8e-97 360.5 782 45.0
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.4e-96 357.5 792 46.7
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.2e-93 346.7 794 41.9
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.7e-92 344.0 690 48.1
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 3.6e-92 343.6 782 44.4
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 4.7e-92 343.2 788 44.8
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 4.4e-90 336.7 759 46.6
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.3e-89 335.1 789 46.9
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 7.0e-88 329.3 676 47.5
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.2e-87 328.6 780 46.5
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.9e-87 326.2 740 44.3
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 7.7e-87 325.9 747 44.7
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.0e-86 325.5 678 45.4
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.0e-86 325.5 737 43.4
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 2.2e-86 324.3 770 45.3
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.5e-86 322.8 693 45.0
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 5.5e-85 319.7 734 46.6
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 7.2e-85 319.3 771 39.8
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.1e-84 317.8 737 45.2
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.4e-83 315.1 667 44.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 3.7e-81 307.0 729 40.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 5.9e-79 299.7 748 43.9
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.3e-78 298.5 730 40.3
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.3e-78 298.5 779 46.3
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 5.0e-78 296.6 734 44.6
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.9e-77 294.7 748 44.1
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.5e-77 294.3 698 45.6
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.2e-76 292.0 578 43.8
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.1e-76 291.2 694 41.9
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 4.7e-76 290.0 722 43.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 8.8e-75 285.8 730 46.8
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.2e-74 285.4 715 40.6
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 5.7e-74 283.1 716 44.1
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 8.3e-73 279.3 784 38.1
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.9e-70 270.8 758 40.5
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 6.5e-70 269.6 754 44.0
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.1e-68 264.6 720 37.6
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.8e-68 264.2 603 41.5
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 6.8e-67 259.6 789 40.1
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 4.4e-66 256.9 768 41.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.3e-65 255.4 579 41.6
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.7e-65 255.0 662 40.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 6.3e-65 253.1 685 40.6
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 3.1e-64 250.8 674 39.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 5.4e-64 250.0 712 37.9
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 5.4e-64 250.0 703 41.4
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 7.0e-64 249.6 746 41.3
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 9.2e-64 249.2 700 39.0
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.5e-61 241.1 717 40.4
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.6e-60 238.4 658 43.3
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.6e-60 238.4 771 35.0
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 3.6e-60 237.3 648 40.1
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 4.7e-60 236.9 397 46.3
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 6.1e-60 236.5 662 41.8
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 4.0e-59 233.8 799 39.5
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 7.5e-58 229.6 716 41.2
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.1e-56 225.7 777 34.6
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.4e-56 225.3 737 38.8
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.4e-56 225.3 762 35.8
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.0e-55 221.5 710 42.1
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 3.5e-55 220.7 650 35.5
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 7.8e-55 219.5 746 40.2
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.9e-53 214.9 326 52.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.6e-53 213.4 709 39.4
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 9.5e-53 212.6 751 34.5
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.7e-52 210.3 707 39.7
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 6.2e-52 209.9 685 34.2
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 2.3e-51 208.0 676 35.9
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 6.8e-51 206.5 711 33.8
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.6e-50 204.5 611 37.8
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.4e-50 203.8 720 37.1
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 4.4e-50 203.8 594 35.9
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 7.5e-50 203.0 712 36.2
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.7e-49 201.8 458 48.5
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.7e-49 200.7 259 54.4
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 4.9e-49 200.3 630 40.2
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 4.9e-49 200.3 721 34.0
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.2e-47 195.7 719 37.7
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.6e-47 193.7 604 38.1
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.0e-46 192.6 667 33.4
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.5e-45 188.7 568 35.9
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.9e-45 188.3 736 32.5
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 5.6e-45 186.8 692 39.5
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.6e-44 185.3 611 36.2
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.1e-44 184.9 695 39.9
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.1e-44 184.9 685 40.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.1e-44 184.9 734 34.5
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 4.7e-44 183.7 305 53.1
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 8.1e-44 183.0 704 31.5
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 4.0e-43 180.6 746 33.1
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 6.8e-43 179.9 481 40.3
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.2e-42 179.1 588 38.8
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.7e-41 174.1 201 55.7
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.1e-40 172.6 631 36.0
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.4e-40 171.4 681 33.0
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.4e-40 171.4 740 33.0
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 5.4e-40 170.2 616 33.8
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.7e-39 167.9 511 35.8
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 3.0e-38 164.5 555 42.2
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.6e-38 163.3 400 38.8
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 6.6e-38 163.3 431 48.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.9e-37 161.8 578 33.6
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 5.6e-37 160.2 664 31.9
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.1e-35 156.0 705 35.2
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 9.9e-34 149.4 443 44.0
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.3e-33 149.1 271 45.4
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.4e-32 145.6 690 29.4
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 4.1e-32 144.1 582 33.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.5e-31 141.0 688 29.1
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.1e-29 136.0 138 65.9
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 9.6e-29 132.9 204 49.5
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.6e-26 123.2 134 56.7
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 4.9e-25 120.6 495 33.1
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.6e-23 115.5 125 59.2
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 2.3e-22 111.7 108 63.0
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.9e-21 108.6 508 32.1
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.9e-21 108.6 508 32.1
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.6e-20 105.5 483 35.2
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 2.1e-20 105.1 556 34.7
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 2.4e-19 101.7 477 31.0
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 3.1e-19 101.3 486 37.0
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 2.6e-18 98.2 143 46.9
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 2.4e-16 91.7 127 54.3
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.6e-15 89.0 571 29.6
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.5e-15 87.8 232 36.2
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.8e-14 85.5 228 34.6
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 8.7e-14 83.2 200 37.0
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 6.9e-11 73.6 87 48.3
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 5.8e-10 70.5 549 29.7
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.7e-09 68.9 107 49.5
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.9e-09 67.4 58 63.8
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.6e-07 62.4 229 34.9
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.6e-07 60.8 212 33.0
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 1.3e-06 59.3 94 41.5
SEGI_22138 Sequoiadendron giganteum HOM05D003795 ORTHO05D004308 6.7e-06 57.0 525 26.7


User provided reference genes

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