Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.7e-111 406.0 199 100.0
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.5e-88 329.7 205 83.4
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 4.9e-87 324.7 206 84.0
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.9e-87 324.7 206 84.0
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.9e-86 322.8 206 83.5
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.8e-84 316.2 205 81.0
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 2.6e-43 179.5 191 52.9
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.4e-41 173.7 191 51.8
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.6e-37 160.2 191 50.8
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.3e-36 156.4 193 47.7
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.8e-36 154.8 203 46.8
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.8e-36 154.5 203 45.8
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.5e-35 153.7 193 46.6
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.0e-35 153.3 190 46.8
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.6e-35 152.9 190 46.3
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.4e-35 152.5 190 46.8
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 9.8e-35 151.0 194 46.4
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 9.8e-35 151.0 204 44.1
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 9.8e-35 151.0 194 47.9
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.7e-34 150.2 192 46.4
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 2.8e-34 149.4 181 47.5
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.8e-34 149.4 202 47.0
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.8e-34 148.7 193 46.6
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 4.8e-34 148.7 194 46.9
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 8.3e-34 147.9 188 51.6
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.1e-33 147.5 193 46.1
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.1e-33 147.5 197 43.7
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 5.4e-33 145.2 193 44.6
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 9.1e-33 144.4 183 46.4
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 9.1e-33 144.4 194 46.9
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 1.2e-32 144.1 188 43.1
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.2e-32 144.1 200 44.5
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 2.7e-32 142.9 192 44.3
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 5.9e-32 141.7 192 43.8
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.0e-31 141.0 187 47.6
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.3e-31 140.6 199 45.2
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.7e-31 140.2 197 43.7
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.7e-31 140.2 186 40.9
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.7e-31 140.2 192 43.2
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 6.5e-31 138.3 177 49.2
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 8.5e-31 137.9 189 42.3
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-30 137.5 194 45.9
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 2.5e-30 136.3 204 40.7
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.2e-30 136.0 198 44.4
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 4.2e-30 135.6 178 46.1
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.6e-29 133.7 194 43.3
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.1e-29 133.3 189 43.9
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-29 132.9 195 44.1
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 3.6e-29 132.5 198 40.9
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.6e-29 132.5 191 42.9
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 3.6e-29 132.5 192 42.2
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 8.0e-29 131.3 192 44.3
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.4e-28 130.6 193 42.0
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.8e-28 130.2 183 45.4
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.8e-28 130.2 196 42.3
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.3e-28 129.8 193 44.0
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.3e-28 129.8 193 42.0
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.3e-28 129.8 191 39.3
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.0e-28 129.4 184 48.4
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 3.0e-28 129.4 190 41.6
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 5.2e-28 128.6 191 39.8
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 5.2e-28 128.6 201 43.3
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 5.2e-28 128.6 195 40.5
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.8e-28 128.3 191 41.9
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 8.8e-28 127.9 187 43.3
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.2e-27 127.5 194 42.3
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.4e-27 125.9 194 42.8
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 4.4e-27 125.6 184 44.6
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.4e-27 125.6 189 41.3
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 5.7e-27 125.2 185 42.7
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 5.7e-27 125.2 177 41.8
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 7.5e-27 124.8 179 41.3
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 7.5e-27 124.8 220 39.5
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 7.5e-27 124.8 215 46.0
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 2.2e-26 123.2 198 42.9
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-26 123.2 191 42.9
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 2.8e-26 122.9 189 39.7
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 8.3e-26 121.3 179 43.0
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.1e-25 120.9 193 40.9
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-25 120.2 192 42.2
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 4.1e-25 119.0 202 40.6
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 5.4e-25 118.6 200 39.5
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 7.0e-25 118.2 185 38.4
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 9.2e-25 117.9 181 44.2
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.2e-24 117.5 180 41.1
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-24 117.1 192 42.2
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.6e-24 117.1 190 39.5
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 1.6e-24 117.1 178 41.6
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.0e-24 116.7 181 43.1
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.7e-24 116.3 181 43.6
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 3.5e-24 115.9 183 42.6
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 3.5e-24 115.9 184 40.2
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 5.9e-24 115.2 187 40.6
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.9e-24 115.2 213 40.8
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 7.8e-24 114.8 184 41.3
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.0e-23 114.4 179 38.0
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.3e-23 114.0 188 39.9
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.3e-23 114.0 170 44.7
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.3e-23 114.0 178 42.1
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.7e-23 113.6 180 43.3
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 1.7e-23 113.6 180 43.3
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.7e-23 113.6 188 42.0
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.7e-23 113.6 186 39.2
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 2.3e-23 113.2 200 40.5
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 2.3e-23 113.2 197 36.5
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 2.9e-23 112.8 184 40.8
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 3.8e-23 112.5 179 41.3
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 6.6e-23 111.7 184 41.8
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.6e-23 111.7 182 41.2
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 6.6e-23 111.7 185 37.8
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.1e-22 110.9 186 40.3
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-22 110.5 187 42.2
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-22 110.2 200 37.0
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 2.5e-22 109.8 185 38.9
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 3.3e-22 109.4 182 42.3
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 3.3e-22 109.4 185 39.5
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 4.3e-22 109.0 192 39.6
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 5.6e-22 108.6 188 41.0
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.2e-21 107.5 182 42.3
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.6e-21 107.1 194 38.7
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 2.1e-21 106.7 178 38.8
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.8e-21 106.3 186 35.5
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 3.6e-21 105.9 188 42.0
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 4.7e-21 105.5 180 41.1
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 1.0e-20 104.4 216 38.0
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.8e-20 103.6 99 50.5
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 2.3e-20 103.2 182 41.2
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 2.3e-20 103.2 182 41.2
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-20 102.8 173 41.6
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 5.2e-20 102.1 193 37.8
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 6.8e-20 101.7 193 37.8
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.8e-20 101.7 186 39.2
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.5e-19 100.5 187 38.0
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.5e-19 100.5 187 38.0
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 2.6e-19 99.8 193 37.8
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 2.6e-19 99.8 193 37.8
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 2.6e-19 99.8 193 37.8
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 2.6e-19 99.8 193 37.8
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.6e-19 99.8 185 34.6
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 2.6e-19 99.8 185 38.9
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 3.4e-19 99.4 173 36.4
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 4.4e-19 99.0 193 37.3
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 4.4e-19 99.0 170 38.8
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 7.5e-19 98.2 182 41.2
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.9e-18 96.3 171 41.5
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.8e-17 93.6 185 33.0
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.8e-17 93.6 162 37.0
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.4e-17 93.2 181 33.7
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 5.4e-17 92.0 202 35.1
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-16 90.9 157 44.6
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.7e-16 89.7 276 31.2
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.3e-15 87.4 198 33.8
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-14 83.2 162 37.0
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.6e-14 82.0 181 34.3
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 9.5e-14 81.3 175 33.7
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.6e-13 80.5 123 42.3
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.6e-13 80.5 205 35.1
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.6e-13 80.5 208 34.1
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 5.2e-12 75.5 175 33.1
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.2e-11 74.3 174 36.2
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-10 70.1 103 37.9
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.7e-10 69.3 99 37.4
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 3.2e-09 66.2 202 31.2
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.4e-09 65.5 99 35.4
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 7.0e-09 65.1 208 33.2
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 9.2e-09 64.7 50 56.0
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 9.2e-09 64.7 79 43.0
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.2e-08 64.3 176 32.4
QL02p068251 Quercus lobata HOM05D001131 ORTHO05D000972 1.0e-07 61.2 215 26.0
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.7e-07 60.5 206 27.7
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.7e-07 60.5 112 34.8
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.3e-07 60.1 94 38.3
PGSC0003DMG400021389 Solanum tuberosum HOM05D002237 ORTHO05D002213 5.6e-06 55.5 38 71.1
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.5e-06 54.7 104 37.5
Peaxi162Scf00259g00111 Petunia axillaris HOM05D002237 ORTHO05D002213 9.5e-06 54.7 40 62.5


User provided reference genes

Program Settings