Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.9e-121 439.1 215 100.0
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 1.0e-98 363.6 191 94.8
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.0e-98 363.6 191 94.8
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.0e-98 363.6 191 94.8
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 5.7e-97 357.8 191 93.7
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.7e-96 356.3 191 93.2
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.1e-79 300.4 188 79.3
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 2.7e-75 285.8 188 78.2
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 5.7e-73 278.1 188 76.1
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.1e-68 263.8 187 72.2
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.8e-66 256.5 187 70.6
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 8.8e-66 254.2 184 71.2
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.2e-65 253.8 188 68.6
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 1.5e-65 253.4 187 72.2
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.0e-65 253.1 187 70.1
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 2.6e-65 252.7 187 69.5
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 9.8e-65 250.8 187 70.1
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.3e-64 250.4 187 70.1
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 2.2e-64 249.6 185 69.7
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.1e-63 247.3 187 67.9
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 3.1e-63 245.7 187 69.0
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 9.2e-63 244.2 183 68.9
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 9.2e-63 244.2 183 68.9
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 9.2e-63 244.2 179 70.4
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 4.5e-62 241.9 185 69.2
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 5.9e-62 241.5 187 67.4
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 1.7e-61 240.0 188 67.0
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.3e-61 239.6 187 66.8
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 5.0e-61 238.4 206 62.1
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 6.6e-61 238.0 196 64.3
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 2.5e-60 236.1 180 67.8
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 2.5e-60 236.1 185 68.1
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 3.3e-60 235.7 189 66.7
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 3.3e-60 235.7 183 68.9
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.2e-59 233.8 184 66.8
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 1.6e-59 233.4 187 67.4
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 3.6e-59 232.3 188 68.1
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.0e-59 231.1 187 65.8
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 1.5e-57 226.9 186 65.1
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 2.0e-57 226.5 201 62.2
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 2.6e-57 226.1 194 65.5
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.6e-57 226.1 193 62.7
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.4e-57 225.7 186 64.5
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 3.4e-57 225.7 201 61.7
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 4.4e-57 225.3 196 61.2
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 5.7e-57 224.9 183 66.1
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 9.8e-57 224.2 191 62.8
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 9.8e-57 224.2 188 63.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.3e-56 223.8 190 63.7
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.7e-56 223.4 189 63.0
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.7e-56 223.4 201 61.2
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.7e-56 222.2 190 62.6
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 3.7e-56 222.2 199 59.8
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 6.4e-56 221.5 201 61.7
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.2e-55 219.2 213 58.2
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 5.4e-55 218.4 189 62.4
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 7.0e-55 218.0 184 63.6
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.2e-54 217.2 200 60.5
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.6e-54 216.9 188 63.8
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 5.9e-54 214.9 212 57.1
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.9e-54 214.9 191 61.3
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 8.6e-53 211.1 183 64.5
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 8.6e-53 211.1 210 55.7
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 1.1e-52 210.7 219 56.6
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.5e-52 210.3 205 57.1
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 3.3e-52 209.1 206 57.8
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.3e-50 203.0 203 55.7
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 6.8e-50 201.4 153 69.9
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 2.2e-48 196.4 154 68.2
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 9.2e-47 191.0 179 60.3
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 4.6e-46 188.7 166 59.6
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.1e-44 184.1 204 54.9
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 7.3e-44 181.4 171 59.6
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 9.5e-44 181.0 155 65.2
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 2.8e-43 179.5 195 52.8
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 2.8e-43 179.5 180 53.9
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.6e-43 179.1 186 55.4
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 3.6e-43 179.1 155 63.9
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 6.2e-43 178.3 195 52.3
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 8.1e-43 177.9 195 50.8
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.1e-43 177.9 171 57.9
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.1e-42 177.6 183 55.7
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 8.9e-42 174.5 206 54.9
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.5e-41 173.7 205 54.6
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.5e-41 173.7 195 51.3
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 9.8e-41 171.0 192 52.1
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.2e-40 169.9 195 50.3
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.9e-40 169.5 204 54.4
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 4.9e-40 168.7 191 54.5
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.1e-39 167.5 189 54.5
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 3.2e-39 166.0 203 53.2
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 9.2e-39 164.5 199 53.8
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 1.2e-38 164.1 199 53.8
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 2.1e-38 163.3 160 59.4
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 1.0e-37 161.0 185 53.5
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 3.9e-37 159.1 199 51.3
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 3.9e-37 159.1 199 51.3
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 3.9e-37 159.1 199 51.3
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.1e-36 157.5 197 51.8
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 7.3e-36 154.8 148 58.8
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 8.1e-35 151.4 198 50.5
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 3.1e-34 149.4 181 49.2
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 2.6e-33 146.4 170 53.5
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 5.8e-33 145.2 188 50.0
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 1.7e-32 143.7 154 55.2
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 8.4e-32 141.4 181 51.9
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.1e-31 139.0 182 50.5
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 7.1e-31 138.3 136 56.6
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.5e-28 130.6 184 49.5
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.6e-27 127.1 191 44.5
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.8e-27 126.3 160 48.8
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.8e-26 123.6 198 47.5
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 3.1e-26 122.9 206 43.2
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 1.2e-25 120.9 188 42.6
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 4.9e-24 115.5 121 57.0
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 2.4e-23 113.2 223 37.2
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 2.1e-22 110.2 162 45.7
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 1.0e-21 107.8 160 45.6
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 3.9e-21 105.9 113 54.0
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 5.3e-18 95.5 133 49.6
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 3.4e-17 92.8 123 46.3
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.4e-15 86.7 135 48.1
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 6.0e-14 82.0 173 41.6
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 9.0e-10 68.2 50 68.0
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.5e-09 67.4 94 46.8
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 3.4e-09 66.2 121 44.6
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 8.4e-08 61.6 43 67.4
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 3.2e-07 59.7 43 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 1.6e-06 57.4 127 38.6


User provided reference genes

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