Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 2.1e-140 502.3 244 100.0
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 2.8e-132 475.3 244 94.7
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 6.2e-132 474.2 244 94.3
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 8.1e-132 473.8 244 93.4
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.1e-131 471.9 244 93.0
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 5.8e-122 441.0 242 86.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 7.6e-122 440.7 244 83.6
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 5.6e-109 397.9 245 77.6
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 1.3e-108 396.7 245 77.6
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 4.5e-106 388.3 248 74.2
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.9e-105 385.6 246 75.6
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 8.4e-105 384.0 244 75.4
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 8.4e-105 384.0 251 72.1
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.4e-104 383.3 244 74.6
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 4.2e-104 381.7 250 72.8
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 9.3e-104 380.6 241 74.3
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.6e-103 379.8 245 72.7
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 3.5e-103 378.6 250 71.2
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 6.0e-103 377.9 244 73.8
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 7.9e-103 377.5 245 71.8
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 1.0e-102 377.1 250 71.6
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 1.3e-102 376.7 244 74.2
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.3e-102 376.7 249 72.7
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 2.3e-102 375.9 245 73.5
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 2.3e-102 375.9 250 70.8
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 1.1e-101 373.6 244 72.5
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.5e-101 373.2 245 73.5
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.9e-101 372.9 249 71.1
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.9e-101 372.9 250 70.4
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.9e-101 372.9 248 71.8
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.9e-101 372.9 248 72.6
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 7.4e-101 370.9 251 70.5
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.1e-99 367.1 246 71.1
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 2.4e-99 365.9 249 71.1
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 9.0e-99 364.0 246 70.3
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 1.5e-98 363.2 206 83.0
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.0e-98 362.8 247 69.6
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 7.6e-98 360.9 250 69.2
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.3e-97 360.1 245 70.6
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 3.8e-97 358.6 251 67.7
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 3.2e-96 355.5 282 63.8
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.7e-95 352.4 246 67.9
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 4.6e-95 351.7 246 69.9
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 4.6e-95 351.7 239 68.2
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 4.6e-95 351.7 238 67.6
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 7.9e-95 350.9 240 67.9
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.9e-93 346.3 244 68.9
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 3.3e-93 345.5 240 66.2
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 5.6e-93 344.7 242 68.2
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.8e-92 342.4 244 68.9
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 2.8e-92 342.4 249 65.9
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.7e-92 342.0 246 66.7
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.1e-91 340.5 239 68.6
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.4e-91 339.3 244 68.0
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 4.0e-91 338.6 237 67.1
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 4.0e-91 338.6 242 66.1
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 5.3e-91 338.2 240 66.7
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 9.0e-91 337.4 242 66.9
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 1.2e-90 337.0 205 78.0
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.5e-90 336.7 243 65.8
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 2.6e-90 335.9 237 65.0
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 2.6e-90 335.9 237 65.4
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 2.6e-90 335.9 242 64.5
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 2.6e-90 335.9 243 65.8
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 5.8e-90 334.7 244 67.2
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.0e-89 334.0 237 65.8
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 2.2e-89 332.8 237 64.6
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 3.8e-89 332.0 242 64.9
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 4.9e-89 331.6 237 65.4
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 8.4e-89 330.9 246 65.4
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 1.9e-88 329.7 237 65.0
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 2.5e-88 329.3 245 64.5
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 3.2e-88 328.9 244 63.9
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 3.2e-88 328.9 274 60.6
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 5.5e-88 328.2 237 65.0
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.6e-87 326.6 190 85.3
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.6e-87 326.6 239 64.4
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 2.1e-87 326.2 237 64.1
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 3.5e-87 325.5 223 69.1
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 4.6e-87 325.1 218 69.3
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 6.0e-87 324.7 250 62.4
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 1.3e-86 323.6 243 63.0
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.1e-85 320.5 237 64.6
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.9e-85 319.7 204 73.0
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 2.5e-85 319.3 237 64.1
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 7.4e-85 317.8 242 67.4
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 2.2e-84 316.2 244 61.5
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 3.7e-84 315.5 200 73.5
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 5.9e-82 308.1 216 70.8
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 1.7e-81 306.6 240 62.9
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 8.5e-81 304.3 204 72.5
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 7.2e-80 301.2 182 77.5
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 4.6e-79 298.5 196 70.9
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 1.8e-78 296.6 246 60.2
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 3.0e-78 295.8 210 65.7
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 6.7e-78 294.7 210 64.8
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 2.5e-77 292.7 269 56.9
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.2e-76 289.7 192 69.8
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 8.2e-76 287.7 211 64.5
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.1e-75 287.3 238 59.2
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 3.1e-75 285.8 211 64.5
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 9.1e-75 284.3 211 64.0
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 1.2e-74 283.9 211 64.0
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.0e-74 283.1 193 69.4
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 3.4e-74 282.3 238 57.6
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.0e-73 280.8 241 53.1
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.2e-73 279.6 239 53.6
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.5e-73 278.1 243 53.1
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.2e-72 274.6 239 54.8
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 5.1e-70 268.5 188 68.1
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 8.2e-68 261.2 232 58.6
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.5e-66 256.9 206 64.1
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.4e-66 255.8 239 48.5
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 3.2e-64 249.2 183 63.9
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 3.2e-64 249.2 166 66.9
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.1e-61 240.7 200 56.0
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.1e-61 240.7 242 52.5
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.4e-59 233.0 164 64.0
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-59 232.6 218 52.3
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 5.9e-58 228.4 144 74.3
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 5.9e-58 228.4 237 54.9
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.1e-56 224.2 218 50.9
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 3.2e-56 222.6 196 59.2
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.6e-55 220.3 173 60.7
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 6.7e-54 214.9 166 65.7
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.8e-52 209.5 215 47.9
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 1.2e-50 204.1 226 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.6e-50 203.8 194 51.5
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 5.9e-50 201.8 172 59.3
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 2.5e-48 196.4 131 73.3
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 4.0e-46 189.1 190 52.1
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.5e-45 187.2 236 45.8
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 4.8e-44 182.2 114 75.4
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 2.3e-41 173.3 192 48.4
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.2e-39 167.5 223 40.8
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 8.0e-39 164.9 110 71.8
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.4e-38 164.1 105 71.4
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.7e-36 157.1 106 67.9
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.2e-36 156.8 108 67.6
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.3e-33 146.7 161 52.8
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 2.3e-33 146.7 215 43.3
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 8.0e-31 138.3 102 67.6
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 3.1e-22 109.8 182 35.7
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 6.8e-22 108.6 99 52.5
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.2e-20 103.6 72 68.1
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 6.0e-18 95.5 67 65.7
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 6.2e-15 85.5 61 67.2
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 8.1e-15 85.1 65 63.1
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-13 80.1 81 50.6
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 4.9e-12 75.9 72 52.8
FAN14G1154 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.2e-11 73.2 209 33.0
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 6.0e-10 68.9 107 36.4


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