Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 3.0e-108 395.2 200 100.0
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 3.7e-98 361.7 200 91.0
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.8e-97 359.4 200 89.5
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 6.9e-97 357.5 200 90.0
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.6e-96 355.5 200 89.5
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 2.6e-96 355.5 200 89.5
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.6e-96 355.5 200 89.5
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 1.1e-67 260.4 196 73.5
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 2.0e-67 259.6 198 71.2
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 9.1e-65 250.8 196 70.4
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 5.5e-54 214.9 205 61.5
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 4.7e-53 211.8 186 64.5
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 1.3e-50 203.8 203 60.6
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 2.2e-50 203.0 198 58.1
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 2.8e-50 202.6 201 58.2
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 6.3e-50 201.4 197 60.9
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 7.0e-49 198.0 197 59.4
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 9.1e-49 197.6 200 55.5
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 1.2e-48 197.2 199 57.8
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 7.7e-48 194.5 188 60.6
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 2.3e-47 193.0 200 57.0
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 2.9e-47 192.6 188 59.6
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.8e-47 192.2 188 59.6
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 6.5e-47 191.4 202 57.9
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 8.6e-47 191.0 186 58.1
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 1.1e-46 190.7 186 59.1
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 1.1e-46 190.7 208 51.9
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 7.2e-46 188.0 199 53.3
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 2.8e-45 186.0 198 55.6
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 6.1e-45 184.9 202 53.5
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 1.0e-44 184.1 201 55.7
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 4.0e-44 182.2 203 56.2
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 4.0e-44 182.2 201 55.7
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 5.2e-44 181.8 196 52.0
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 5.2e-44 181.8 196 52.0
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 2.0e-43 179.9 204 55.4
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 2.0e-43 179.9 198 50.0
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 7.5e-43 177.9 190 57.9
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 7.5e-43 177.9 193 56.5
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 9.8e-43 177.6 200 54.0
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 1.7e-42 176.8 182 59.9
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 2.2e-42 176.4 199 50.8
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 2.8e-42 176.0 210 54.3
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 8.3e-42 174.5 201 56.2
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 8.3e-42 174.5 197 51.8
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 1.1e-41 174.1 197 53.3
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 1.8e-41 173.3 201 52.2
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 3.1e-41 172.6 205 51.7
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 3.1e-41 172.6 204 48.5
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 3.1e-41 172.6 196 51.0
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 4.1e-41 172.2 206 49.0
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 4.1e-41 172.2 198 51.5
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 5.4e-41 171.8 199 51.3
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 9.2e-41 171.0 196 51.5
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 1.6e-40 170.2 199 50.3
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 1.6e-40 170.2 199 50.3
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 1.6e-40 170.2 199 50.8
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 7.8e-40 167.9 201 51.7
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 7.8e-40 167.9 201 51.7
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 7.8e-40 167.9 203 48.3
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 1.3e-39 167.2 200 50.5
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.9e-39 166.0 193 56.5
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 2.9e-39 166.0 208 46.6
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 2.9e-39 166.0 203 47.8
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 3.8e-39 165.6 206 48.1
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 8.6e-39 164.5 193 54.4
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 8.6e-39 164.5 193 54.4
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 1.5e-38 163.7 206 51.0
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 3.3e-38 162.5 200 50.0
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 5.6e-38 161.8 200 50.0
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 7.3e-38 161.4 199 50.8
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 1.6e-37 160.2 204 47.1
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 2.1e-37 159.8 198 46.5
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 2.1e-37 159.8 200 47.0
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 4.7e-37 158.7 196 48.0
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 6.1e-37 158.3 203 48.8
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.0e-36 157.5 182 51.1
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 3.0e-36 156.0 207 48.8
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 5.2e-36 155.2 199 48.2
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 6.8e-36 154.8 200 48.0
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 8.9e-36 154.5 197 46.7
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 1.2e-35 154.1 196 45.9
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 3.4e-35 152.5 205 45.4
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 7.5e-35 151.4 184 51.1
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 9.8e-35 151.0 203 46.3
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 6.4e-34 148.3 208 45.2
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 6.4e-34 148.3 188 48.9
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 6.4e-34 148.3 204 47.5
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 1.1e-33 147.5 226 41.6
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 2.4e-33 146.4 196 48.0
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 2.4e-33 146.4 202 46.0
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 2.4e-33 146.4 184 45.7
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 5.4e-33 145.2 199 47.2
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 9.2e-33 144.4 198 46.0
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 1.2e-32 144.1 208 44.2
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.6e-32 143.7 161 50.3
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.6e-32 143.7 161 50.3
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 1.7e-31 140.2 205 45.4
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 2.3e-31 139.8 207 45.9
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.2e-29 134.0 180 44.4
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 1.6e-29 133.7 205 44.9
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 3.6e-29 132.5 180 43.9
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 1.1e-28 131.0 198 42.4
CiPaw.08G090800 Carya illinoinensis HOM05D006641 ORTHO05D007573 6.8e-28 128.3 200 44.0
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 1.2e-27 127.5 205 41.0
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 6.0e-24 115.2 203 41.4
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 1.2e-21 107.5 222 36.9
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 1.2e-21 107.5 222 36.9
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 1.6e-21 107.1 211 39.8
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 4.7e-21 105.5 222 36.5
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 2.3e-20 103.2 213 38.5
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 3.1e-20 102.8 226 35.4
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 4.0e-20 102.4 222 36.9
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 4.0e-20 102.4 228 36.8
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 6.8e-20 101.7 170 38.8
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 3.4e-19 99.4 211 39.8
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 4.4e-19 99.0 217 35.5
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 7.5e-19 98.2 225 36.0
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 4.9e-18 95.5 215 35.3
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 6.4e-18 95.1 219 33.8
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 3.2e-17 92.8 212 34.9
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 1.6e-16 90.5 153 42.5
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 2.1e-16 90.1 216 34.7
CDE05G1007 Ceratophyllum demersum HOM05D006641 ORTHO05D007573 1.9e-14 83.6 108 45.4
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 5.6e-14 82.0 211 34.1
TWI75G0789 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.4e-12 77.4 103 46.6
SEGI_14616 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 5.8e-11 72.0 174 32.2
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 2.4e-09 66.6 194 30.9
Actinidia21410 Actinidia chinensis HOM05D000446 ORTHO05D000321 5.4e-09 65.5 99 44.4
ATR0326G068 Amborella trichopoda HOM05D001935 ORTHO05D001700 5.4e-09 65.5 177 29.9
CANSAT78G1422 Cannabis sativa HOM05D001935 ORTHO05D001700 3.5e-08 62.8 181 31.5
COL.COLO4_03618 Corchorus olitorius HOM05D001935 ORTHO05D001700 6.0e-08 62.0 176 33.0
DCAR_030201 Daucus carota HOM05D001935 ORTHO05D001700 7.8e-08 61.6 171 33.3
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 1.7e-07 60.5 215 30.2
Nn3g18024 Nelumbo nucifera HOM05D001935 ORTHO05D001700 3.9e-07 59.3 180 32.8
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.5e-06 57.4 182 29.1
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.5e-06 57.4 175 27.4
Atru.chr1.1571 Acer truncatum HOM05D001935 ORTHO05D001700 1.9e-06 57.0 176 27.8
Nn4g24055 Nelumbo nucifera HOM05D001935 ORTHO05D001700 1.9e-06 57.0 195 30.3
THA.LOC104827233 Tarenaya hassleriana HOM05D001935 ORTHO05D001700 1.9e-06 57.0 179 30.7
CDE06G0938 Ceratophyllum demersum HOM05D001935 ORTHO05D001700 2.5e-06 56.6 181 29.3
Sabra17G0103500 Salix brachista HOM05D001935 ORTHO05D001700 2.5e-06 56.6 182 29.1
Manes.06G062400 Manihot esculenta HOM05D001935 ORTHO05D001700 3.3e-06 56.2 183 29.0
Nn1g02733 Nelumbo nucifera HOM05D001935 ORTHO05D001700 3.3e-06 56.2 173 30.1
Potri.017G121200 Populus trichocarpa HOM05D001935 ORTHO05D001700 3.3e-06 56.2 175 26.9
Sabra17G0100200 Salix brachista HOM05D001935 ORTHO05D001700 4.3e-06 55.8 189 26.5
Actinidia15913 Actinidia chinensis HOM05D001935 ORTHO05D001700 5.6e-06 55.5 178 30.3
ATR0326G051 Amborella trichopoda HOM05D001935 ORTHO05D001700 5.6e-06 55.5 176 31.2
Sabra04G0063200 Salix brachista HOM05D001935 ORTHO05D001700 5.6e-06 55.5 189 27.0
PGSC0003DMG402030595 Solanum tuberosum HOM05D001935 ORTHO05D001700 5.6e-06 55.5 195 29.2
Ciclev10012926m.g Citrus clementina HOM05D001935 ORTHO05D001700 9.6e-06 54.7 172 29.1
Manes.14G136100 Manihot esculenta HOM05D001935 ORTHO05D001700 9.6e-06 54.7 173 30.1
Thecc.04G125800 Theobroma cacao HOM05D001935 ORTHO05D001700 9.6e-06 54.7 175 28.6


User provided reference genes

Program Settings