Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 4.6e-24 113.6 53 100.0
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 1.1e-17 92.4 43 97.7
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 2.1e-16 88.2 43 90.7
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 4.6e-16 87.0 43 88.4
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.6e-16 87.0 43 88.4
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.0e-16 86.7 43 88.4
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.0e-15 85.9 43 90.7
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.3e-15 85.5 43 86.0
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 3.0e-15 84.3 43 83.7
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 5.1e-15 83.6 43 81.4
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 8.7e-15 82.8 43 79.1
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 8.7e-15 82.8 43 83.7
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.1e-14 82.4 43 81.4
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.1e-14 82.4 43 79.1
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.5e-14 82.0 43 81.4
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.5e-14 82.0 43 81.4
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.5e-14 82.0 43 79.1
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.5e-14 82.0 43 79.1
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.9e-14 81.6 43 79.1
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.9e-14 81.6 43 79.1
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 1.9e-14 81.6 43 79.1
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.9e-14 81.6 43 81.4
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.9e-14 81.6 43 81.4
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.9e-14 81.6 43 81.4
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.5e-14 81.3 43 79.1
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.5e-14 81.3 43 79.1
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.5e-14 81.3 43 79.1
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.5e-14 81.3 43 79.1
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.5e-14 81.3 43 79.1
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 2.5e-14 81.3 43 81.4
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 2.5e-14 81.3 43 79.1
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 3.3e-14 80.9 45 77.8
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 4.3e-14 80.5 43 79.1
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 4.3e-14 80.5 43 79.1
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 4.3e-14 80.5 43 79.1
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 5.6e-14 80.1 43 76.7
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 5.6e-14 80.1 43 79.1
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 5.6e-14 80.1 41 82.9
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 5.6e-14 80.1 43 74.4
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 7.4e-14 79.7 43 79.1
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 9.6e-14 79.3 43 76.7
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 9.6e-14 79.3 49 71.4
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 9.6e-14 79.3 43 79.1
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 9.6e-14 79.3 45 66.7
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 9.6e-14 79.3 43 79.1
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.3e-13 79.0 43 76.7
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.6e-13 78.6 43 76.7
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.6e-13 78.6 43 79.1
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.1e-13 78.2 43 76.7
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.1e-13 78.2 43 76.7
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.1e-13 78.2 43 76.7
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.8e-13 77.8 43 79.1
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.8e-13 77.8 43 79.1
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 2.8e-13 77.8 45 73.3
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.7e-13 77.4 45 75.6
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 3.7e-13 77.4 46 63.0
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 6.2e-13 76.6 49 65.3
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 8.1e-13 76.3 43 74.4
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.1e-12 75.9 43 74.4
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.1e-12 75.9 43 74.4
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.4e-12 75.5 43 74.4
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.4e-12 75.5 43 74.4
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 1.8e-12 75.1 43 74.4
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.8e-12 75.1 43 76.7
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 3.1e-12 74.3 43 76.7
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 4.0e-12 73.9 43 74.4
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 4.0e-12 73.9 43 72.1
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 4.0e-12 73.9 43 72.1
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 5.3e-12 73.6 43 74.4
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 5.3e-12 73.6 43 69.8
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 6.9e-12 73.2 43 74.4
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 6.9e-12 73.2 50 62.0
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 9.0e-12 72.8 57 59.6
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 9.0e-12 72.8 45 64.4
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.2e-11 72.4 45 64.4
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.2e-11 72.4 45 64.4
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.2e-11 72.4 45 64.4
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.2e-11 72.4 45 64.4
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.2e-11 72.4 45 64.4
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.2e-11 72.4 45 64.4
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 1.5e-11 72.0 41 75.6
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.0e-11 71.6 51 58.8
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.0e-11 71.6 49 63.3
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.0e-11 71.6 49 63.3
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.6e-11 71.2 40 72.5
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.6e-11 71.2 43 67.4
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 2.6e-11 71.2 43 72.1
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 3.4e-11 70.9 43 69.8
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 3.4e-11 70.9 43 65.1
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 3.4e-11 70.9 43 65.1
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 3.4e-11 70.9 43 65.1
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 3.4e-11 70.9 45 64.4
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 3.4e-11 70.9 43 65.1
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 4.5e-11 70.5 43 65.1
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 4.5e-11 70.5 45 64.4
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 5.8e-11 70.1 43 72.1
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 5.8e-11 70.1 43 72.1
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 5.8e-11 70.1 43 69.8
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 7.6e-11 69.7 41 70.7
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 7.6e-11 69.7 43 69.8
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 7.6e-11 69.7 43 62.8
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 9.9e-11 69.3 43 65.1
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 2.2e-10 68.2 43 62.8
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 2.9e-10 67.8 41 68.3
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 2.9e-10 67.8 48 60.4
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 3.8e-10 67.4 44 61.4
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 4.9e-10 67.0 40 67.5
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 8.4e-10 66.2 41 65.9
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.1e-09 65.9 43 62.8
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 3.5e-08 60.8 45 62.2
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 4.6e-08 60.5 45 57.8
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 4.6e-08 60.5 45 57.8
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 7.9e-08 59.7 55 52.7
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 5.1e-07 57.0 43 60.5


User provided reference genes

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