Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-79 298.9 162 100.0
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-69 266.2 162 90.7
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 3.5e-67 258.5 163 89.0
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 9.0e-63 243.8 167 86.8
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-48 196.8 165 73.3
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.1e-47 192.2 165 72.1
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.0e-47 190.7 165 71.5
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 2.6e-46 189.1 165 70.9
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.6e-46 189.1 165 70.9
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.9e-44 183.0 165 69.7
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-44 182.6 166 68.7
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-44 182.6 166 68.7
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.8e-40 169.1 148 68.9
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-34 150.6 177 57.6
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.0e-31 137.9 171 55.6
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.7e-26 121.3 99 76.8
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 3.7e-24 115.5 171 50.3
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.8e-23 113.2 122 59.8
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 4.1e-23 112.1 166 48.8
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 3.8e-21 105.5 168 48.8
RcHm_v2.0_Chr1g0314551 Rosa chinensis HOM05D004469 ORTHO05D342664 3.2e-20 102.4 107 58.9
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.8e-18 96.7 169 45.6
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 5.2e-18 95.1 151 45.7
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 3.4e-17 92.4 165 39.4
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 4.4e-17 92.0 152 42.1
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 9.8e-17 90.9 160 41.9
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 4.8e-16 88.6 165 42.4
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 8.3e-16 87.8 169 42.0
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 8.3e-16 87.8 164 43.3
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.8e-15 86.7 154 39.0
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.8e-15 86.7 147 40.8
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 2.4e-15 86.3 171 43.3
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.4e-15 86.3 171 43.3
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 9.1e-15 84.3 167 39.5
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.2e-14 84.0 168 36.3
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.2e-14 84.0 152 37.5
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.2e-14 84.0 165 40.0
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 2.0e-14 83.2 164 42.1
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.5e-14 82.4 166 41.6
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.9e-14 81.6 171 41.5
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 7.7e-14 81.3 164 41.5
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.7e-13 80.1 164 36.6
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 3.8e-13 79.0 153 39.9
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 5.0e-13 78.6 166 39.2
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 8.5e-13 77.8 166 36.1
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.5e-12 77.0 166 37.3
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.5e-12 77.0 167 36.5
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 2.5e-12 76.3 165 38.2
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.5e-12 76.3 147 39.5
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 4.2e-12 75.5 153 40.5
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 4.2e-12 75.5 149 34.9
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 5.5e-12 75.1 166 39.8
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 7.2e-12 74.7 150 36.7
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 9.5e-12 74.3 168 38.7
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 9.5e-12 74.3 168 36.9
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 1.6e-11 73.6 165 37.6
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 1.6e-11 73.6 154 38.3
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.6e-11 73.6 156 34.0
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 2.1e-11 73.2 148 36.5
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 2.7e-11 72.8 167 36.5
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.7e-11 72.8 166 39.2
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 3.6e-11 72.4 145 38.6
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 4.7e-11 72.0 160 38.1
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 6.1e-11 71.6 153 35.3
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 8.0e-11 71.2 167 34.7
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.0e-10 70.9 167 34.7
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 1.4e-10 70.5 166 36.1
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.8e-10 70.1 166 36.1
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 3.0e-10 69.3 159 36.5
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 6.8e-10 68.2 154 39.0
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 8.8e-10 67.8 165 33.3
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 8.8e-10 67.8 168 35.7
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.2e-09 67.4 146 33.6
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.6e-09 66.2 157 36.9
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 5.7e-09 65.1 137 35.8
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 7.5e-09 64.7 170 37.1
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 9.8e-09 64.3 146 32.9
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.3e-08 63.9 146 30.8
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 1.7e-08 63.5 165 35.2
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 2.8e-08 62.8 146 33.6
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 2.8e-08 62.8 142 35.9
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 2.8e-08 62.8 154 35.7
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 4.9e-08 62.0 166 33.7
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 1.1e-07 60.8 166 32.5
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.1e-07 60.8 165 37.6
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.4e-07 60.5 159 32.7
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.8e-07 60.1 148 33.8
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.8e-07 60.1 152 33.6
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.1e-07 59.3 157 35.0
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 3.1e-07 59.3 152 32.9
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 4.1e-07 58.9 152 34.2
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 4.1e-07 58.9 152 33.6
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 9.2e-07 57.8 155 32.9
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 9.2e-07 57.8 167 32.3
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 9.2e-07 57.8 167 37.7
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 9.2e-07 57.8 166 31.9
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.2e-06 57.4 134 39.6
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.6e-06 57.0 166 33.7
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 2.0e-06 56.6 144 31.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 3.5e-06 55.8 165 33.9


User provided reference genes

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