Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.2e-262 909.4 492 100.0
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 3.3e-249 864.8 493 91.7
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.8e-239 832.4 479 91.0
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 7.3e-233 810.4 494 84.2
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.2e-232 809.7 488 87.7
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 7.6e-230 800.4 488 86.9
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 8.4e-229 797.0 492 83.9
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.6e-227 792.7 488 86.3
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 3.3e-225 785.0 439 92.7
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 1.8e-215 752.7 491 79.0
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 2.4e-215 752.3 434 88.9
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 3.8e-213 745.0 491 78.8
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.9e-213 744.6 492 79.3
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.4e-212 743.0 492 82.3
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 4.2e-212 741.5 492 78.3
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 5.5e-212 741.1 486 79.2
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 9.3e-212 740.3 494 79.1
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 4.6e-211 738.0 492 78.3
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 6.0e-211 737.6 470 85.3
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.0e-210 736.9 492 77.8
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 3.0e-210 735.3 500 78.6
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 3.9e-210 734.9 495 78.2
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 8.7e-210 733.8 493 78.5
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 8.7e-210 733.8 441 84.6
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 3.3e-209 731.9 439 84.5
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 3.3e-209 731.9 496 78.0
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 4.3e-209 731.5 492 77.0
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 7.4e-209 730.7 494 77.9
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.6e-208 729.6 492 77.4
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 3.1e-207 725.3 495 76.8
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 4.0e-207 724.9 497 77.5
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.3e-207 724.5 435 85.5
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 5.3e-207 724.5 497 77.3
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 6.9e-207 724.2 496 77.0
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 2.0e-206 722.6 490 77.8
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 1.3e-205 719.9 439 83.8
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 6.5e-205 717.6 436 83.5
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 6.5e-205 717.6 443 82.6
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 8.4e-205 717.2 450 81.3
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.9e-204 716.1 437 82.8
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 2.5e-204 715.7 449 81.3
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 4.2e-204 714.9 432 83.8
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.5e-204 714.5 492 75.6
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.1e-204 714.1 486 77.2
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 7.1e-204 714.1 492 76.0
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.2e-203 713.4 436 83.3
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 4.6e-203 711.4 493 74.6
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 7.9e-203 710.7 449 81.1
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 1.0e-202 710.3 450 78.9
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.3e-202 709.9 492 75.2
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.8e-202 709.5 449 80.0
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.8e-202 709.5 492 74.8
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.8e-202 709.5 439 82.2
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 3.0e-202 708.8 441 80.7
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 3.0e-202 708.8 469 77.0
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 3.0e-202 708.8 433 83.4
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 5.1e-202 708.0 492 75.2
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 6.7e-202 707.6 492 74.2
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 8.7e-202 707.2 446 79.4
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 8.7e-202 707.2 463 78.0
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 8.7e-202 707.2 463 78.0
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 8.7e-202 707.2 436 82.3
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.1e-201 706.8 441 79.8
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.1e-201 706.8 474 76.6
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 2.5e-201 705.7 436 81.7
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.5e-201 705.7 475 76.2
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 4.3e-201 704.9 441 79.4
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 4.3e-201 704.9 435 82.3
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.3e-201 704.9 492 74.6
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 5.7e-201 704.5 435 80.9
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 5.7e-201 704.5 435 80.7
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 7.4e-201 704.1 434 81.3
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 7.4e-201 704.1 458 77.9
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 7.4e-201 704.1 458 77.9
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 7.4e-201 704.1 434 81.1
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 1.3e-200 703.4 441 79.6
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 1.3e-200 703.4 436 82.3
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 1.3e-200 703.4 494 73.7
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.6e-200 703.0 441 79.6
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 2.2e-200 702.6 441 79.4
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 2.2e-200 702.6 441 79.4
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 3.7e-200 701.8 439 81.8
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 4.8e-200 701.4 452 77.4
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 1.4e-199 699.9 441 80.7
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.1e-199 698.4 486 76.1
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 5.3e-199 698.0 441 78.9
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 5.3e-199 698.0 486 74.9
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 6.9e-199 697.6 433 82.0
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 9.0e-199 697.2 448 80.4
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 4.5e-198 694.9 434 81.6
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 4.5e-198 694.9 492 74.4
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 7.7e-198 694.1 435 81.1
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 7.7e-198 694.1 457 78.3
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 1.3e-197 693.3 491 73.7
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 3.8e-197 691.8 485 74.2
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 6.5e-197 691.0 443 79.9
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 6.5e-197 691.0 475 75.6
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 6.5e-197 691.0 491 73.3
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.9e-196 689.5 432 79.9
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 9.4e-196 687.2 432 79.6
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 2.1e-195 686.0 465 76.6
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 2.1e-195 686.0 479 74.9
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 1.4e-194 683.3 434 78.8
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 1.8e-194 682.9 462 76.4
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 6.7e-194 681.0 434 79.3
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.0e-193 679.5 451 77.8
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.1e-191 673.7 431 78.4
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 2.4e-191 672.5 434 77.9
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 1.2e-190 670.2 445 78.0
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 1.0e-189 667.2 485 72.0
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 8.5e-189 664.1 470 72.8
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 2.7e-187 659.1 431 76.8
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 9.7e-185 650.6 468 71.4
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 4.8e-184 648.3 413 80.1
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.4e-183 646.0 437 75.7
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.2e-178 628.2 388 81.4
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 9.7e-177 624.0 439 72.9
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.6e-174 616.7 453 70.0
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.2e-169 600.5 432 70.8
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 9.7e-169 597.4 434 69.8
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 2.0e-166 589.7 465 67.3
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.1e-164 583.9 427 71.4
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 2.6e-161 572.8 430 67.4
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 1.1e-159 567.4 430 67.4
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 7.2e-156 554.7 431 66.8
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.8e-154 550.1 360 77.5
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 9.8e-153 544.3 504 61.3
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.8e-147 526.2 428 65.2
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.6e-142 508.8 318 83.0
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 9.5e-140 501.1 315 81.6
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 5.8e-113 412.1 233 86.7
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 9.3e-111 404.8 321 70.4
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.5e-105 387.5 258 79.1
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.0e-105 387.1 436 48.4
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 3.4e-105 386.3 330 65.5
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 8.7e-101 371.7 258 74.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 6.2e-99 365.5 258 73.6
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 3.8e-88 329.7 182 89.6
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.1e-82 311.6 177 83.6
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 1.0e-77 295.0 255 64.7
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 8.8e-77 292.0 228 79.8
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.0e-76 290.8 405 48.4
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 1.3e-75 288.1 201 76.1
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.1e-66 258.5 217 63.6
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 2.6e-65 253.8 223 61.9
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.3e-64 251.5 217 62.2
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 1.5e-63 248.1 245 57.1
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 1.5e-63 248.1 401 40.1
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.8e-61 241.1 292 46.6
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 8.2e-59 232.3 215 58.6
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 7.0e-58 229.2 121 90.9
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.2e-57 228.4 182 66.5
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.5e-52 209.1 116 88.8
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.5e-41 173.7 136 66.9
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 3.0e-37 160.6 170 57.6
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.5e-36 158.3 89 85.4
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 7.0e-26 122.9 127 46.5
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 1.6e-22 111.7 67 82.1
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.1e-21 109.0 212 38.2
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.4e-21 108.6 77 66.2
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 6.8e-21 106.3 156 45.5
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 3.4e-20 104.0 64 81.2
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.3e-16 92.0 57 78.9
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 5.1e-16 90.1 117 47.9
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 3.3e-15 87.4 66 68.2
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 1.8e-13 81.6 45 88.9
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 6.8e-13 79.7 135 43.7
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 1.2e-12 79.0 53 75.5
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.0e-12 78.2 48 83.3
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.7e-11 75.1 69 63.8
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 3.7e-11 73.9 46 78.3
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.6e-09 68.6 37 94.6
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 1.3e-08 65.5 58 65.5
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 2.8e-06 57.8 31 80.6
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 6.2e-06 56.6 71 49.3


User provided reference genes

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