Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 4.7e-144 514.6 276 100.0
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-67 260.8 267 55.1
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.3e-66 257.3 303 49.2
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 5.1e-66 255.4 197 68.0
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.4e-63 246.5 263 53.6
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.3e-61 240.7 212 59.9
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.9e-61 239.6 214 58.9
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.2e-60 236.1 272 52.2
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.5e-53 211.8 213 54.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.6e-51 205.7 214 52.8
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 2.5e-49 199.9 209 53.6
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 4.1e-47 192.6 215 50.2
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 4.1e-47 192.6 214 51.4
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 5.3e-47 192.2 224 58.5
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.2e-46 191.0 176 56.2
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 2.6e-46 189.9 179 58.1
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 7.7e-46 188.3 191 53.4
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.7e-46 188.3 212 50.0
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.0e-45 188.0 266 52.6
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-45 187.6 178 55.6
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-44 184.5 170 55.3
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.4e-44 184.1 258 42.6
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.4e-44 184.1 180 53.9
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.9e-44 183.7 183 53.6
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.9e-44 183.7 167 57.5
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.2e-44 182.6 187 51.9
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 4.2e-44 182.6 200 51.5
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 9.4e-44 181.4 165 57.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 9.4e-44 181.4 165 57.0
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.6e-43 180.6 219 51.1
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 2.1e-43 180.3 162 57.4
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 6.1e-43 178.7 175 55.4
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 6.1e-43 178.7 211 46.9
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 7.9e-43 178.3 178 52.2
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 7.9e-43 178.3 178 52.2
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.0e-42 177.9 198 50.0
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.0e-42 177.9 162 56.8
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.0e-42 177.9 180 52.8
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.4e-42 177.6 171 52.6
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.4e-42 177.6 161 59.0
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.4e-42 177.6 178 53.4
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.8e-42 177.2 161 57.1
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.8e-42 177.2 166 56.6
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.8e-42 177.2 166 56.6
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.8e-42 177.2 183 54.1
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.8e-42 177.2 210 48.1
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.3e-42 176.8 167 56.3
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.0e-42 176.4 199 49.2
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 3.9e-42 176.0 161 57.8
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 5.1e-42 175.6 176 52.8
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 5.1e-42 175.6 212 46.2
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 8.8e-42 174.9 166 53.0
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.1e-41 174.5 196 50.5
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.5e-41 174.1 161 57.1
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.5e-41 174.1 161 57.8
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.5e-41 174.1 192 52.1
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 2.0e-41 173.7 161 57.8
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.5e-41 173.3 161 55.9
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 3.3e-41 172.9 206 50.0
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 3.3e-41 172.9 179 51.4
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 3.3e-41 172.9 166 53.6
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 3.3e-41 172.9 162 53.7
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 4.3e-41 172.6 171 53.2
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 7.4e-41 171.8 166 53.0
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 9.7e-41 171.4 210 47.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.3e-40 171.0 193 47.7
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.3e-40 171.0 162 54.3
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.7e-40 170.6 162 54.3
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.7e-40 170.6 165 54.5
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 2.2e-40 170.2 171 52.6
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.2e-40 170.2 181 53.6
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.2e-40 170.2 181 53.6
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.8e-40 169.9 166 51.8
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 2.8e-40 169.9 165 54.5
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.8e-40 169.9 162 52.5
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.7e-40 169.5 181 52.5
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.7e-40 169.5 212 49.5
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.7e-40 169.5 210 48.6
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.8e-40 169.1 210 48.1
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 4.8e-40 169.1 179 51.4
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.2e-40 168.3 175 51.4
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.1e-39 167.9 215 46.0
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.4e-39 167.5 175 52.0
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.8e-39 167.2 161 52.8
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.8e-39 167.2 161 54.7
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 2.4e-39 166.8 173 51.4
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 2.4e-39 166.8 161 55.9
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.4e-39 166.8 225 52.9
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.2e-38 164.5 188 47.3
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 3.4e-38 162.9 164 51.8
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 4.5e-38 162.5 201 44.3
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 4.5e-38 162.5 161 52.2
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.7e-37 160.6 161 52.2
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 2.2e-37 160.2 176 48.9
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 8.5e-37 158.3 159 54.1
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 8.5e-37 158.3 160 51.2
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.4e-36 157.5 166 48.2
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.4e-36 157.5 175 48.0
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.9e-36 157.1 169 49.7
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.9e-36 157.1 175 48.6
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 2.5e-36 156.8 162 50.6
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 7.2e-36 155.2 161 50.9
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 4.7e-35 152.5 173 48.6
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.0e-34 151.4 209 43.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.4e-33 146.0 179 46.9
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.3e-32 144.4 131 57.3
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 6.3e-32 142.1 210 41.9
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.0e-30 137.1 174 45.4
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 3.5e-30 136.3 170 47.6
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 4.5e-30 136.0 114 62.3
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.3e-29 134.4 130 52.3
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 3.8e-29 132.9 170 42.9
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 6.5e-29 132.1 227 37.4
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 4.2e-28 129.4 147 49.7
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 7.2e-28 128.6 146 46.6
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 4.7e-27 125.9 141 48.2
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 6.1e-27 125.6 196 40.3
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.0e-26 124.8 170 42.4
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.8e-26 124.0 210 36.7
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 2.0e-22 110.5 93 61.3
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 5.9e-22 109.0 114 48.2
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 2.2e-21 107.1 123 44.7
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 2.9e-21 106.7 119 46.2
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 8.8e-18 95.1 78 61.5
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 7.5e-17 92.0 166 36.7
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 5.0e-13 79.3 70 54.3
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 8.5e-13 78.6 100 40.0
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 5.5e-12 75.9 54 66.7
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 5.5e-12 75.9 70 54.3
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-11 74.7 76 48.7
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 9.1e-07 58.5 107 57.9


User provided reference genes

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