Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240831 Rosa chinensis HOM05D007182 ORTHO05D008919 4.1e-97 358.2 204 100.0
FAN13G2785 Fragaria x ananassa HOM05D007182 ORTHO05D008919 1.8e-68 263.1 211 80.6
FAN18G1758 Fragaria x ananassa HOM05D007182 ORTHO05D008919 2.4e-68 262.7 210 81.9
FAN08G1433 Fragaria x ananassa HOM05D007182 ORTHO05D008919 2.6e-67 259.2 211 81.5
FvH4_5g38830 Fragaria vesca HOM05D007182 ORTHO05D008919 1.7e-66 256.5 211 81.0
FAN04G2762 Fragaria x ananassa HOM05D007182 ORTHO05D008919 6.0e-64 248.1 211 78.2
FAN04G3126 Fragaria x ananassa HOM05D007182 ORTHO05D008919 2.3e-63 246.1 211 75.8
Glyma.13G084500 Glycine max HOM05D007182 ORTHO05D008919 4.2e-41 172.2 195 52.3
Glyma.14G166200 Glycine max HOM05D007182 ORTHO05D008919 1.0e-39 167.5 193 52.3
Phvul.008G168400 Phaseolus vulgaris HOM05D007182 ORTHO05D008919 1.1e-38 164.1 194 51.0
Duzib116G0693 Durio zibethinus HOM05D007182 ORTHO05D008919 2.5e-38 162.9 190 51.6
Duzib093G0280 Durio zibethinus HOM05D007182 ORTHO05D008919 4.3e-38 162.2 212 46.2
CiPaw.05G229300 Carya illinoinensis HOM05D007182 ORTHO05D008919 7.4e-38 161.4 226 46.9
Duzib041G0557 Durio zibethinus HOM05D007182 ORTHO05D008919 7.4e-38 161.4 214 47.2
Thecc.08G116300 Theobroma cacao HOM05D007182 ORTHO05D008919 2.4e-36 156.4 214 49.5
Glyma.04G253900 Glycine max HOM05D007182 ORTHO05D008919 1.5e-35 153.7 196 46.9
VMungo0647G1564 Vigna mungo HOM05D007182 ORTHO05D008919 5.9e-35 151.8 184 48.9
Atru.chr13.1314 Acer truncatum HOM05D007182 ORTHO05D008919 1.3e-34 150.6 189 48.7
Atru.chr13.1358 Acer truncatum HOM05D007182 ORTHO05D008919 1.3e-34 150.6 189 48.7
Prupe.1G506300 Prunus persica HOM05D007182 ORTHO05D008919 1.3e-34 150.6 229 49.3
CiPaw.06G024500 Carya illinoinensis HOM05D007182 ORTHO05D008919 2.2e-34 149.8 225 43.1
Potri.002G089650 Populus trichocarpa HOM05D007182 ORTHO05D008919 5.0e-34 148.7 218 40.4
Phvul.009G025900 Phaseolus vulgaris HOM05D007182 ORTHO05D008919 4.2e-33 145.6 196 51.5
Lalb_Chr11g0065671 Lupinus albus HOM05D007182 ORTHO05D008919 9.4e-33 144.4 221 46.6
Manes.02G158600 Manihot esculenta HOM05D007182 ORTHO05D008919 9.4e-33 144.4 212 42.9
Sabra05G0129100 Salix brachista HOM05D007182 ORTHO05D008919 9.4e-33 144.4 190 41.6
COL.COLO4_21819 Corchorus olitorius HOM05D007182 ORTHO05D008919 2.1e-32 143.3 204 44.1
Glyma.06G108400 Glycine max HOM05D007182 ORTHO05D008919 4.6e-32 142.1 199 47.2
VMungo1309G0514 Vigna mungo HOM05D007182 ORTHO05D008919 7.9e-32 141.4 180 47.8
Lalb_Chr08g0241731 Lupinus albus HOM05D007182 ORTHO05D008919 1.0e-31 141.0 199 45.2
Lj1g0017374 Lotus japonicus HOM05D007182 ORTHO05D008919 3.9e-31 139.0 222 42.8
Gorai.010G046800 Gossypium raimondii HOM05D007182 ORTHO05D008919 5.1e-31 138.7 197 43.1
Potri.005G171600 Populus trichocarpa HOM05D007182 ORTHO05D008919 5.1e-31 138.7 195 41.5
TPR.G30417 Trifolium pratense HOM05D007182 ORTHO05D008919 5.1e-31 138.7 187 50.3
MELO3C022789.2 Cucumis melo HOM05D007182 ORTHO05D008919 6.7e-31 138.3 241 38.6
Manes.18G072600 Manihot esculenta HOM05D007182 ORTHO05D008919 8.8e-31 137.9 190 44.2
Eucgr.F03740 Eucalyptus grandis HOM05D007182 ORTHO05D008919 2.0e-30 136.7 198 46.0
Lalb_Chr10g0102011 Lupinus albus HOM05D007182 ORTHO05D008919 2.0e-30 136.7 224 41.1
Gohir.D06G041600 Gossypium hirsutum HOM05D007182 ORTHO05D008919 5.7e-30 135.2 197 42.6
Gohir.A06G040600 Gossypium hirsutum HOM05D007182 ORTHO05D008919 7.4e-30 134.8 195 42.6
ClCG03G009070 Citrullus lanatus HOM05D007182 ORTHO05D008919 3.7e-29 132.5 240 35.8
AT1G36940 Arabidopsis thaliana HOM05D007182 ORTHO05D008919 4.1e-28 129.0 182 42.9
Lj1g0021904 Lotus japonicus HOM05D007182 ORTHO05D008919 4.1e-28 129.0 255 38.0
TWI36G1401 Tripterygium wilfordii HOM05D007182 ORTHO05D008919 6.9e-28 128.3 219 42.9
Thhalv10004990m.g Eutrema salsugineum HOM05D007182 ORTHO05D008919 9.1e-28 127.9 173 44.5
Ciclev10002385m.g Citrus clementina HOM05D007182 ORTHO05D008919 3.4e-27 125.9 237 40.9
Medtr3g073330 Medicago truncatula HOM05D007182 ORTHO05D008919 4.5e-27 125.6 187 46.5
Sabra02G0070600 Salix brachista HOM05D007182 ORTHO05D008919 4.5e-27 125.6 169 45.6
TWI56G1442 Tripterygium wilfordii HOM05D007182 ORTHO05D008919 4.5e-27 125.6 197 41.6
Sopen11g008530 Solanum pennellii HOM05D007182 ORTHO05D008919 5.9e-27 125.2 222 40.5
PGR042G1174 Punica granatum HOM05D007182 ORTHO05D008919 1.0e-26 124.4 205 44.4
Solyc11g013500.1 Solanum lycopersicum HOM05D007182 ORTHO05D008919 1.0e-26 124.4 196 42.9
TPR.G32946 Trifolium pratense HOM05D007182 ORTHO05D008919 1.7e-26 123.6 183 43.7
Hma1.2p1_0221F.1_g093130 Hydrangea macrophylla HOM05D007182 ORTHO05D008919 2.9e-26 122.9 213 43.2
PGSC0003DMG400027800 Solanum tuberosum HOM05D007182 ORTHO05D008919 5.0e-26 122.1 198 42.9
Psat5g134040 Pisum sativum HOM05D007182 ORTHO05D008919 8.5e-26 121.3 198 42.4
Sed0021526 Sechium edule HOM05D007182 ORTHO05D008919 1.1e-25 120.9 250 34.0
Dinv26722 Davidia involucrata HOM05D007182 ORTHO05D008919 1.9e-25 120.2 157 45.9
Gorai.009G242300 Gossypium raimondii HOM05D007182 ORTHO05D008919 2.5e-25 119.8 192 42.7
CARHR034810 Cardamine hirsuta HOM05D007182 ORTHO05D008919 3.2e-25 119.4 178 41.6
AL1G51080 Arabidopsis lyrata HOM05D007182 ORTHO05D008919 5.5e-25 118.6 167 43.1
Carub.0001s3387 Capsella rubella HOM05D007182 ORTHO05D008919 1.2e-24 117.5 179 40.8
Gohir.D05G234100 Gossypium hirsutum HOM05D007182 ORTHO05D008919 1.6e-24 117.1 193 41.5
Rhsim06G0109300 Rhododendron simsii HOM05D007182 ORTHO05D008919 1.6e-24 117.1 194 38.1
THA.LOC104813133 Tarenaya hassleriana HOM05D007182 ORTHO05D008919 1.6e-24 117.1 186 44.6
TWI12G0744 Tripterygium wilfordii HOM05D007182 ORTHO05D008919 2.7e-24 116.3 188 39.9
TAR197G0002 Trochodendron aralioides HOM05D007182 ORTHO05D008919 7.9e-24 114.8 194 38.7
Gohir.A05G231800 Gossypium hirsutum HOM05D007182 ORTHO05D008919 1.4e-23 114.0 191 41.4
Cc00_g10670 Coffea canephora HOM05D007182 ORTHO05D008919 8.8e-23 111.3 215 37.2
THA.LOC104806807 Tarenaya hassleriana HOM05D007182 ORTHO05D008919 8.8e-23 111.3 189 41.3
Aa31LG6G9060 Aethionema arabicum HOM05D007182 ORTHO05D008919 1.5e-22 110.5 168 43.5
TAR628G0731 Trochodendron aralioides HOM05D007182 ORTHO05D008919 2.6e-22 109.8 175 42.3
A05p23400 Brassica napus HOM05D007182 ORTHO05D008919 1.3e-21 107.5 173 41.6
BraA05t21203Z Brassica rapa HOM05D007182 ORTHO05D008919 1.3e-21 107.5 173 41.6
CsaV3_5G023550 Cucumis sativus L. HOM05D007182 ORTHO05D008919 1.7e-21 107.1 216 35.2
BcaB03g13641 Brassica carinata HOM05D007182 ORTHO05D008919 2.8e-21 106.3 160 42.5
Peaxi162Scf00476g00051 Petunia axillaris HOM05D007182 ORTHO05D008919 2.8e-21 106.3 182 41.2
TAR127G0001 Trochodendron aralioides HOM05D007182 ORTHO05D008919 2.8e-21 106.3 171 42.7
Sc23g0000930 Simmondsia chinensis HOM05D007182 ORTHO05D008919 1.1e-20 104.4 208 36.1
Migut.N03323 Erythranthe guttata HOM05D007182 ORTHO05D008919 2.4e-20 103.2 187 39.0
Nn5g27955 Nelumbo nucifera HOM05D007182 ORTHO05D008919 2.4e-20 103.2 205 36.6
Medtr5g060450 Medicago truncatula HOM05D007182 ORTHO05D008919 4.1e-20 102.4 166 44.0
Dinv27387 Davidia involucrata HOM05D007182 ORTHO05D008919 1.2e-19 100.9 209 39.7
Sp1g31070 Schrenkiella parvula HOM05D007182 ORTHO05D008919 1.6e-19 100.5 133 45.9
DCAR_014791 Daucus carota HOM05D007182 ORTHO05D008919 2.6e-19 99.8 175 38.3
Nn1g08539 Nelumbo nucifera HOM05D007182 ORTHO05D008919 1.0e-18 97.8 185 38.4
DCAR_023125 Daucus carota HOM05D007182 ORTHO05D008919 1.3e-18 97.4 171 38.0
Nitab4.5_0009801g0010 Nicotiana tabacum HOM05D007182 ORTHO05D008919 5.0e-18 95.5 158 40.5
Oeu043797.1 Olea europaea HOM05D000316 ORTHO05D008919 5.0e-18 95.5 179 38.5
Oeu043798.1 Olea europaea HOM05D000316 ORTHO05D008919 5.0e-18 95.5 179 38.5
SGA_v2.0_scaffold28G12033 Striga asiatica HOM05D007182 ORTHO05D008919 1.5e-17 94.0 181 38.7
Oeu017862.1 Olea europaea HOM05D007182 ORTHO05D008919 2.1e-16 90.1 189 34.9
EL10Ac1g00042 Beta vulgaris HOM05D007182 ORTHO05D008919 5.2e-15 85.5 231 31.6
SGA_v2.0_scaffold118G32440 Striga asiatica HOM05D007182 ORTHO05D008919 8.2e-13 78.2 170 34.1
Nitab4.5_0000051g0140 Nicotiana tabacum HOM05D007182 ORTHO05D008919 2.4e-12 76.6 117 44.4
Ah.05g172700 Amaranthus hybridus HOM05D007182 ORTHO05D008919 2.0e-11 73.6 231 29.0
Lsat_1_v5_gn_4_133360 Lactuca sativa HOM05D007182 ORTHO05D008919 1.1e-09 67.8 188 36.2
AUR62004689 Chenopodium quinoa HOM05D007182 ORTHO05D008919 7.2e-09 65.1 148 34.5
MSTRG.1489 Avicennia marina HOM05D007182 ORTHO05D008919 1.6e-08 63.9 139 34.5
DCAR_014280 Daucus carota HOM05D007182 ORTHO05D008919 6.8e-07 58.5 169 30.8
SGA_v2.0_scaffold24G10509 Striga asiatica HOM05D007182 ORTHO05D008919 8.8e-07 58.2 174 29.3
MBI06_g01043_MAGBIO Magnolia biondii HOM05D007182 ORTHO05D008919 2.6e-06 56.6 140 35.7
SalBow7G0102 Salvia bowleyana HOM05D007182 ORTHO05D008919 7.5e-06 55.1 185 31.4
SalBow7G3005 Salvia bowleyana HOM05D007182 ORTHO05D008919 7.5e-06 55.1 185 31.4


User provided reference genes

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