Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 1.2e-46 189.5 96 100.0
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 6.6e-45 183.7 96 96.9
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 6.6e-45 183.7 96 96.9
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.2e-44 181.0 96 94.8
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.2e-44 181.0 96 94.8
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-43 179.5 96 93.8
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 8.6e-37 156.8 96 81.2
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 2.5e-36 155.2 96 77.1
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 3.3e-36 154.8 96 78.1
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 5.6e-36 154.1 96 76.0
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 2.1e-35 152.1 96 77.1
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 3.6e-35 151.4 96 78.1
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 6.1e-35 150.6 96 81.2
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 8.0e-35 150.2 97 76.3
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 1.0e-34 149.8 98 76.5
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.0e-34 149.8 97 77.3
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 1.4e-34 149.4 96 77.1
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.1e-34 148.3 96 75.0
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 3.1e-34 148.3 100 76.0
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 4.0e-34 147.9 94 76.6
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 5.2e-34 147.5 98 75.5
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 6.8e-34 147.1 97 77.3
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 1.2e-33 146.4 96 74.0
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 76.0
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.5e-33 146.0 96 74.0
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.5e-33 146.0 96 74.0
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 2.0e-33 145.6 100 75.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 2.0e-33 145.6 100 77.0
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 2.0e-33 145.6 97 75.3
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 2.6e-33 145.2 100 76.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 2.6e-33 145.2 100 76.0
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 2.6e-33 145.2 98 74.5
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 3.4e-33 144.8 100 75.0
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 3.4e-33 144.8 97 76.3
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.8e-33 144.1 73 94.5
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 7.5e-33 143.7 97 73.2
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 9.8e-33 143.3 96 70.8
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 9.8e-33 143.3 100 73.0
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 9.8e-33 143.3 98 74.5
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 1.3e-32 142.9 97 73.2
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 1.3e-32 142.9 99 77.8
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 69.4
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 2.2e-32 142.1 97 70.1
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 2.9e-32 141.7 97 69.1
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 2.9e-32 141.7 97 69.1
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.9e-32 141.0 73 93.2
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.9e-32 141.0 73 93.2
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.9e-32 141.0 73 93.2
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 4.9e-32 141.0 97 68.0
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 68.0
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 68.0
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 68.0
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 69.1
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 68.0
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 68.0
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 68.0
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 8.3e-32 140.2 98 68.4
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 8.3e-32 140.2 97 71.1
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 1.1e-31 139.8 97 68.0
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 67.0
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 68.0
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 68.0
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 1.4e-31 139.4 97 68.0
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 1.9e-31 139.0 99 73.7
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 3.2e-31 138.3 100 72.0
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 3.2e-31 138.3 98 66.3
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 3.2e-31 138.3 100 72.0
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 4.1e-31 137.9 97 70.1
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 5.4e-31 137.5 96 77.1
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 5.4e-31 137.5 96 70.8
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 7.0e-31 137.1 95 73.7
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 7.0e-31 137.1 98 72.4
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 9.2e-31 136.7 96 74.0
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 1.2e-30 136.3 97 66.0
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 2.0e-30 135.6 97 68.0
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.0e-30 135.6 98 72.4
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.0e-30 135.6 98 72.4
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 2.0e-30 135.6 96 67.7
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 2.7e-30 135.2 96 71.9
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 2.7e-30 135.2 97 66.0
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 2.7e-30 135.2 97 66.0
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 2.7e-30 135.2 97 66.0
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 2.7e-30 135.2 97 66.0
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 2.7e-30 135.2 97 66.0
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 3.5e-30 134.8 97 66.0
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.5e-30 134.8 98 71.4
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.5e-30 134.8 98 73.5
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.5e-30 134.8 98 71.4
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 69.7
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 4.6e-30 134.4 98 71.4
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 6.0e-30 134.0 98 70.4
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 6.0e-30 134.0 104 69.2
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 7.8e-30 133.7 98 70.4
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 7.8e-30 133.7 100 69.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 7.8e-30 133.7 100 69.0
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.0e-29 133.3 97 71.1
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.0e-29 133.3 100 67.0
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 1.7e-29 132.5 98 69.4
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 1.7e-29 132.5 98 69.4
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 67.3
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 67.3
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 67.3
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 3.0e-29 131.7 100 68.0
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.9e-29 131.3 97 62.9
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 3.9e-29 131.3 98 66.3
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.9e-29 131.3 101 68.3
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.9e-29 131.3 97 67.0
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.9e-29 131.3 97 67.0
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 5.0e-29 131.0 98 68.4
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 5.0e-29 131.0 96 66.7
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 6.6e-29 130.6 98 66.3
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 8.6e-29 130.2 99 64.6
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 8.6e-29 130.2 94 70.2
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.1e-28 129.8 97 68.0
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.1e-28 129.8 107 61.7
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 1.1e-28 129.8 96 66.7
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 1.9e-28 129.0 98 68.4
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 2.5e-28 128.6 88 68.2
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 7.3e-28 127.1 91 68.1
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 9.5e-28 126.7 98 66.3
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.6e-27 125.9 98 67.3
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 2.8e-27 125.2 75 82.7
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.6e-27 124.8 88 67.0
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 3.6e-27 124.8 102 64.7
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 8.0e-27 123.6 98 65.3
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 8.0e-27 123.6 121 56.2
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 8.0e-27 123.6 94 66.0
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.1e-26 123.2 100 66.0
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 3.1e-26 121.7 100 65.0
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.1e-26 121.7 89 66.3
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 6.8e-26 120.6 99 60.6
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 8.9e-26 120.2 95 63.2
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.0e-25 119.0 103 62.1
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 4.4e-25 117.9 102 66.7
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 9.8e-25 116.7 98 58.2
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.3e-24 116.3 88 68.2
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 2.2e-24 115.5 87 65.5
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 2.9e-24 115.2 97 61.9
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 2.9e-24 115.2 98 57.1
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 3.7e-24 114.8 97 59.8
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 6.4e-24 114.0 97 60.8
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 1.1e-23 113.2 76 73.7
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 2.1e-22 109.0 74 71.6
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 2.7e-22 108.6 95 54.7
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 1.5e-20 102.8 73 71.2
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.5e-20 102.1 63 77.8
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 4.3e-20 101.3 107 49.5
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 2.1e-19 99.0 82 62.2
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 2.1e-19 99.0 59 78.0
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 2.3e-18 95.5 82 56.1
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 8.3e-16 87.0 61 63.9
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 2.8e-11 72.0 74 48.6
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 1.4e-10 69.7 92 41.3
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 1.8e-10 69.3 78 47.4
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 4.4e-09 64.7 88 44.3
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 1.6e-06 56.2 52 53.8


User provided reference genes

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