Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240781 Rosa chinensis HOM05D007277 ORTHO05D006336 8.0e-89 330.5 178 100.0
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 2.1e-57 226.1 160 73.8
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 9.9e-47 190.7 177 66.1
FvH4_5g13221 Fragaria vesca HOM05D007277 ORTHO05D006336 4.3e-42 175.3 165 64.8
FAN08G1790 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.6e-28 130.2 108 61.1
FvH4_5g13140 Fragaria vesca HOM05D007277 ORTHO05D006336 7.9e-28 127.9 108 59.3
FAN18G3246 Fragaria x ananassa HOM05D007277 ORTHO05D006336 7.9e-28 127.9 108 59.3
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 1.3e-27 127.1 108 58.3
FAN18G0686 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.3e-27 126.3 108 57.4
FvH4_5g13230 Fragaria vesca HOM05D007277 ORTHO05D006336 6.7e-27 124.8 108 58.3
FvH4_5g13130 Fragaria vesca HOM05D007277 ORTHO05D006336 1.1e-26 124.0 108 56.5
FAN18G2501 Fragaria x ananassa HOM05D007277 ORTHO05D006336 3.3e-26 122.5 108 57.4
FAN18G2870 Fragaria x ananassa HOM05D000423 ORTHO05D000284 4.3e-26 122.1 100 61.0
FAN08G3205 Fragaria x ananassa HOM05D007277 ORTHO05D006336 3.1e-24 115.9 149 49.0
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 4.1e-24 115.5 108 55.6
FvH4_5g13190 Fragaria vesca HOM05D007277 ORTHO05D013598 7.9e-20 101.3 109 55.0
FvH4_5g13220 Fragaria vesca HOM05D007277 ORTHO05D006336 7.4e-18 94.7 87 60.9
MD11G1013900 Malus domestica HOM05D007277 ORTHO05D006336 3.7e-17 92.4 119 48.7
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 4.1e-16 89.0 108 46.3
Ciclev10023444m.g Citrus clementina HOM05D007277 ORTHO05D006336 9.1e-16 87.8 114 43.0
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 9.1e-16 87.8 129 42.6
MD03G1009100 Malus domestica HOM05D007277 ORTHO05D006336 1.2e-15 87.4 132 41.7
MD03G1011400 Malus domestica HOM05D007277 ORTHO05D006336 1.2e-15 87.4 117 45.3
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 1.2e-15 87.4 119 46.2
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 1.5e-15 87.0 122 45.1
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 2.0e-15 86.7 114 42.1
FAN08G2286 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.9e-15 85.1 95 47.4
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 7.7e-15 84.7 105 44.8
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 1.0e-14 84.3 124 42.7
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 5.0e-14 82.0 122 43.4
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 5.0e-14 82.0 110 44.5
Prupe.6G011800 Prunus persica HOM05D007277 ORTHO05D006336 6.5e-14 81.6 113 39.8
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 8.5e-14 81.3 105 42.9
Prupe.1G109400 Prunus persica HOM05D007277 ORTHO05D006336 8.5e-14 81.3 113 39.8
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 8.5e-14 81.3 108 47.2
MD14G1141800 Malus domestica HOM05D007277 ORTHO05D006336 1.9e-13 80.1 113 42.5
Prupe.6G011700 Prunus persica HOM05D007277 ORTHO05D006336 3.2e-13 79.3 118 42.4
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 7.2e-13 78.2 115 39.1
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 9.4e-13 77.8 110 43.6
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 1.6e-12 77.0 101 45.5
Atru.chr4.1303 Acer truncatum HOM05D010298 ORTHO05D012539 6.1e-12 75.1 122 39.3
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 6.1e-12 75.1 108 45.4
MD12G1151700 Malus domestica HOM05D007277 ORTHO05D006336 8.0e-12 74.7 115 40.0
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 1.4e-11 73.9 112 41.1
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 1.4e-11 73.9 112 41.1
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.8e-11 73.6 101 43.6
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 1.8e-11 73.6 131 38.2
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 1.8e-11 73.6 108 47.2
FvH4_5g13222 Fragaria vesca HOM05D007277 ORTHO05D006336 3.9e-11 72.4 99 43.4
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 3.9e-11 72.4 114 42.1
MD03G1009500 Malus domestica HOM05D007277 ORTHO05D006336 5.2e-11 72.0 117 41.0
MD03G1010100 Malus domestica HOM05D007277 ORTHO05D006336 5.2e-11 72.0 91 45.1
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 6.7e-11 71.6 121 35.5
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 8.8e-11 71.2 128 39.1
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.5e-10 70.5 118 43.2
FvH4_5g13141 Fragaria vesca HOM05D007277 ORTHO05D006336 2.6e-10 69.7 99 46.5
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 3.3e-10 69.3 123 37.4
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 3.3e-10 69.3 123 33.3
FAN18G0842 Fragaria x ananassa HOM05D007277 ORTHO05D006336 5.7e-10 68.6 110 41.8
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 5.7e-10 68.6 105 41.9
Atru.chr4.1305 Acer truncatum HOM05D010298 ORTHO05D006336 9.7e-10 67.8 101 41.6
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-09 67.4 108 39.8
Ciclev10024327m.g Citrus clementina HOM05D007277 ORTHO05D006336 2.2e-09 66.6 115 37.4
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 2.8e-09 66.2 123 35.8
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 6.3e-09 65.1 104 35.6
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 6.3e-09 65.1 106 37.7
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 1.1e-08 64.3 123 36.6
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 1.1e-08 64.3 110 37.3
Sed0019610 Sechium edule HOM05D014519 ORTHO05D006336 1.1e-08 64.3 103 35.0
FAN08G2638 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.4e-08 63.9 82 45.1
MD12G1151900 Malus domestica HOM05D007277 ORTHO05D006336 5.3e-08 62.0 98 41.8
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 1.2e-07 60.8 109 40.4
QL02p080387 Quercus lobata HOM05D007277 ORTHO05D006336 2.0e-07 60.1 122 33.6
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 2.0e-07 60.1 111 34.2
ClCG04G011470 Citrullus lanatus HOM05D014519 ORTHO05D006336 2.6e-07 59.7 86 34.9
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 2.6e-07 59.7 106 37.7
PGSC0003DMG400024518 Solanum tuberosum HOM05D007277 ORTHO05D006336 2.6e-07 59.7 112 36.6
PGSC0003DMG400024676 Solanum tuberosum HOM05D007277 ORTHO05D006336 2.6e-07 59.7 104 36.5
Rhsim12G0165400 Rhododendron simsii HOM05D007277 ORTHO05D006336 5.9e-07 58.5 162 35.8
Cfa002610 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.3e-06 57.4 89 41.6
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 1.3e-06 57.4 107 35.5
QL02p080510 Quercus lobata HOM05D007277 ORTHO05D006336 1.7e-06 57.0 129 30.2
FAN18G1844 Fragaria x ananassa HOM05D007277 ORTHO05D006336 2.2e-06 56.6 77 45.5
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 2.2e-06 56.6 111 36.9
QL10p047937 Quercus lobata HOM05D007277 ORTHO05D006336 2.9e-06 56.2 105 34.3
Potri.017G022262 Populus trichocarpa HOM05D010635 ORTHO05D006336 3.8e-06 55.8 116 33.6
Sopen03g033720 Solanum pennellii HOM05D007277 ORTHO05D006336 3.8e-06 55.8 111 34.2
Sed0012100 Sechium edule HOM05D014519 ORTHO05D006336 5.0e-06 55.5 113 32.7


User provided reference genes

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