Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 1.3e-37 159.1 73 100.0
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 4.1e-31 137.5 73 86.3
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.0e-29 132.9 73 83.6
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.7e-29 132.1 76 82.9
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 2.2e-29 131.7 72 83.3
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.2e-29 131.7 72 83.3
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.9e-29 131.3 70 84.3
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 3.8e-29 131.0 73 82.2
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.5e-29 130.2 72 81.9
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.5e-29 130.2 72 81.9
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.5e-29 130.2 72 81.9
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.5e-28 128.3 72 80.6
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 2.5e-28 128.3 73 80.8
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.5e-28 127.1 72 80.6
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.5e-28 127.1 72 80.6
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.5e-28 127.1 72 80.6
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 7.2e-28 126.7 73 76.7
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.6e-27 125.6 73 78.1
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.1e-27 123.6 68 83.8
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.1e-27 123.6 68 83.8
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 6.1e-27 123.6 71 80.3
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 8.0e-27 123.2 73 76.7
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 8.0e-27 123.2 73 79.5
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 8.0e-27 123.2 68 82.4
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 8.0e-27 123.2 71 77.5
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.0e-26 122.9 73 76.7
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.4e-26 122.5 73 78.1
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.4e-26 122.5 73 78.1
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 76.7
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 76.7
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.3e-26 121.7 71 73.2
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 2.3e-26 121.7 68 80.9
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.3e-26 121.7 68 83.8
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 3.0e-26 121.3 68 80.9
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.0e-26 121.3 72 79.2
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 4.0e-26 120.9 73 76.7
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.2e-26 120.6 68 80.9
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.2e-26 120.6 68 80.9
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 5.2e-26 120.6 72 75.0
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 5.2e-26 120.6 73 76.7
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 5.2e-26 120.6 73 75.3
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 6.8e-26 120.2 71 77.5
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.8e-26 120.2 71 76.1
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 8.8e-26 119.8 69 79.7
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.2e-25 119.4 71 77.5
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.5e-25 119.0 68 79.4
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 72.6
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 75.3
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 75.3
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 2.0e-25 118.6 71 73.2
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.0e-25 118.6 65 80.0
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 78.1
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.4e-25 117.9 73 75.3
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 3.4e-25 117.9 73 75.3
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 4.4e-25 117.5 73 71.2
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 4.4e-25 117.5 73 72.6
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 5.7e-25 117.1 74 73.0
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 5.7e-25 117.1 74 75.7
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 7.5e-25 116.7 71 76.1
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 7.5e-25 116.7 71 76.1
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 7.5e-25 116.7 73 75.3
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 7.5e-25 116.7 71 74.6
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 9.8e-25 116.3 74 71.6
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 9.8e-25 116.3 74 71.6
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 9.8e-25 116.3 73 75.3
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.3e-24 115.9 73 72.6
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 1.7e-24 115.5 73 69.9
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.7e-24 115.5 73 71.2
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.7e-24 115.5 71 70.4
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 2.8e-24 114.8 68 75.0
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 3.7e-24 114.4 73 74.0
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 3.7e-24 114.4 74 67.6
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 3.7e-24 114.4 74 67.6
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.7e-24 114.4 73 78.1
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.9e-24 114.0 73 71.2
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 4.9e-24 114.0 71 70.4
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 6.3e-24 113.6 72 73.6
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 6.3e-24 113.6 73 74.0
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 73 72.6
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 71 74.6
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.1e-23 112.8 79 68.4
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.4e-23 112.5 65 76.9
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.8e-23 112.1 65 75.4
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.8e-23 112.1 71 70.4
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.8e-23 112.1 71 70.4
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.8e-23 112.1 71 70.4
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 2.4e-23 111.7 73 69.9
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.4e-23 111.7 65 76.9
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 3.1e-23 111.3 73 69.9
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 4.1e-23 110.9 73 71.2
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 5.4e-23 110.5 71 71.8
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 7.0e-23 110.2 73 69.9
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 7.0e-23 110.2 73 69.9
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 7.0e-23 110.2 73 69.9
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 7.0e-23 110.2 73 69.9
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.0e-23 110.2 69 69.6
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 7.0e-23 110.2 71 66.2
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 9.1e-23 109.8 73 71.2
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 9.1e-23 109.8 66 72.7
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.2e-22 109.4 71 70.4
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.0e-22 108.6 65 72.3
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 2.7e-22 108.2 66 74.2
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.7e-22 108.2 71 66.2
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 5.9e-22 107.1 73 68.5
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 5.9e-22 107.1 66 69.7
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 7.7e-22 106.7 61 75.4
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 7.7e-22 106.7 73 67.1
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 7.7e-22 106.7 73 67.1
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.0e-21 106.3 68 67.6
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.3e-21 105.9 97 54.6
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 1.3e-21 105.9 74 67.6
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.7e-21 105.5 101 52.5
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 2.9e-21 104.8 73 65.8
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.8e-21 104.4 90 56.7
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 5.0e-21 104.0 63 69.8
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 8.6e-21 103.2 95 54.7
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 8.6e-21 103.2 62 77.4
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 8.6e-21 103.2 62 77.4
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 8.6e-21 103.2 63 76.2
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 8.6e-21 103.2 62 77.4
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 8.6e-21 103.2 62 77.4
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 8.6e-21 103.2 62 77.4
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 8.6e-21 103.2 62 77.4
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-20 102.8 63 74.6
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.1e-20 102.8 63 74.6
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.1e-20 102.8 63 74.6
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.1e-20 102.8 63 74.6
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.5e-20 102.4 63 74.6
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.5e-20 102.4 63 74.6
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 1.5e-20 102.4 67 68.7
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.5e-20 102.4 63 74.6
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 3.3e-20 101.3 67 67.2
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 4.2e-20 100.9 61 70.5
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 4.2e-20 100.9 63 68.3
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 7.2e-20 100.1 100 51.0
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 9.5e-20 99.8 69 65.2
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.0e-18 96.3 73 57.5
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.8e-18 95.5 61 72.1
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.3e-18 95.1 83 60.2
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.0e-18 94.7 65 63.1
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 4.0e-18 94.4 69 65.2
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 4.0e-18 94.4 69 65.2
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 6.8e-18 93.6 51 82.4
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.8e-18 93.6 56 73.2
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 6.8e-18 93.6 62 71.0
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 8.9e-18 93.2 73 60.3
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 2.6e-17 91.7 56 71.4
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 3.4e-17 91.3 56 67.9
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 5.7e-17 90.5 118 42.4
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 9.8e-17 89.7 56 73.2
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 9.8e-17 89.7 53 73.6
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 9.8e-17 89.7 89 48.3
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 9.8e-17 89.7 56 71.4
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 1.3e-16 89.4 57 66.7
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.9e-16 87.4 56 73.2
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.9e-16 87.4 56 64.3
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 8.3e-16 86.7 56 71.4
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 8.3e-16 86.7 62 58.1
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.1e-15 86.3 56 67.9
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 1.8e-15 85.5 56 71.4
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 2.4e-15 85.1 56 67.9
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.2e-14 82.8 65 56.9
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 5.9e-14 80.5 47 72.3
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.0e-13 79.7 56 67.9
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.9e-13 77.8 56 60.7
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.9e-13 77.8 46 73.9
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.9e-13 77.8 56 66.1
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 5.0e-13 77.4 51 70.6
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 6.6e-13 77.0 62 50.0
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.6e-13 76.6 56 58.9
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 8.6e-13 76.6 62 50.0
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.5e-12 75.9 49 71.4
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 9.5e-12 73.2 39 84.6
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.2e-11 72.8 56 58.9
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.1e-11 72.0 56 51.8
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.8e-11 71.6 63 52.4
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 4.7e-11 70.9 40 77.5
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 1.4e-10 69.3 62 50.0
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 1.5e-09 65.9 43 72.1
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 2.9e-08 61.6 38 65.8
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 3.7e-08 61.2 32 75.0
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 4.6e-06 54.3 54 42.6


User provided reference genes

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