Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 9.8e-25 115.9 56 100.0
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.3e-13 79.0 40 90.0
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-13 79.0 40 90.0
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 4.3e-12 73.9 40 85.0
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 5.6e-12 73.6 39 84.6
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.6e-12 73.6 39 84.6
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.6e-12 73.6 39 84.6
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.6e-12 73.6 39 84.6
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.6e-12 73.6 39 84.6
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 5.6e-12 73.6 39 84.6
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 5.6e-12 73.6 40 85.0
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 7.3e-12 73.2 40 85.0
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 7.3e-12 73.2 40 80.0
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 7.3e-12 73.2 41 80.5
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 9.5e-12 72.8 40 80.0
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 9.5e-12 72.8 40 82.5
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 9.5e-12 72.8 39 84.6
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.6e-11 72.0 40 80.0
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.1e-11 71.6 39 82.1
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 2.1e-11 71.6 40 82.5
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 2.1e-11 71.6 40 80.0
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 2.8e-11 71.2 40 82.5
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.8e-11 71.2 40 77.5
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 3.6e-11 70.9 41 78.0
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 3.6e-11 70.9 40 80.0
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.7e-11 70.5 37 83.8
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.7e-11 70.5 41 75.6
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 6.2e-11 70.1 41 73.2
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.2e-11 70.1 39 82.1
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.2e-11 70.1 39 82.1
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.2e-11 70.1 39 82.1
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 6.2e-11 70.1 40 77.5
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 6.2e-11 70.1 40 80.0
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 6.2e-11 70.1 41 78.0
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 8.0e-11 69.7 40 77.5
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 8.0e-11 69.7 40 77.5
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.1e-10 69.3 40 75.0
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.4e-10 68.9 40 77.5
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 1.4e-10 68.9 41 73.2
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 1.4e-10 68.9 40 82.5
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.4e-10 68.9 40 77.5
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.4e-10 68.9 40 77.5
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.8e-10 68.6 40 80.0
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.8e-10 68.6 40 75.0
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.8e-10 68.6 41 75.6
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.8e-10 68.6 41 78.0
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.8e-10 68.6 40 75.0
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.8e-10 68.6 41 80.5
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.3e-10 68.2 40 75.0
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.3e-10 68.2 40 75.0
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 3.1e-10 67.8 40 72.5
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 3.1e-10 67.8 40 72.5
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.1e-10 67.8 40 75.0
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 3.1e-10 67.8 40 75.0
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.1e-10 67.8 41 82.9
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.1e-10 67.8 41 82.9
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 3.1e-10 67.8 40 77.5
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.1e-10 67.8 40 77.5
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 3.1e-10 67.8 40 77.5
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 4.0e-10 67.4 40 72.5
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.0e-10 67.4 41 80.5
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.0e-10 67.4 35 88.6
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.0e-10 67.4 35 88.6
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 4.0e-10 67.4 35 88.6
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 4.0e-10 67.4 40 77.5
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.0e-10 67.4 41 80.5
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 5.2e-10 67.0 40 72.5
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 5.2e-10 67.0 40 72.5
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 5.2e-10 67.0 38 78.9
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 5.2e-10 67.0 35 88.6
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 6.8e-10 66.6 40 72.5
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 8.9e-10 66.2 35 88.6
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 8.9e-10 66.2 41 73.2
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 8.9e-10 66.2 40 77.5
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.2e-09 65.9 40 75.0
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 1.2e-09 65.9 40 77.5
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.2e-09 65.9 40 77.5
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.5e-09 65.5 35 82.9
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.5e-09 65.5 35 85.7
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.5e-09 65.5 40 72.5
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.5e-09 65.5 38 71.1
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.5e-09 65.5 38 71.1
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 1.5e-09 65.5 40 77.5
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 2.0e-09 65.1 40 75.0
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 2.0e-09 65.1 35 85.7
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.0e-09 65.1 39 74.4
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 2.0e-09 65.1 41 75.6
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 2.6e-09 64.7 39 71.8
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 2.6e-09 64.7 35 80.0
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 2.6e-09 64.7 40 70.0
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.6e-09 64.7 41 70.7
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 3.4e-09 64.3 40 67.5
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.4e-09 63.9 41 73.2
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 4.4e-09 63.9 40 75.0
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 7.5e-09 63.2 40 80.0
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.5e-09 63.2 38 71.1
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 7.5e-09 63.2 36 75.0
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 9.8e-09 62.8 35 77.1
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 9.8e-09 62.8 37 73.0
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 9.8e-09 62.8 34 82.4
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 9.8e-09 62.8 41 70.7
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.7e-08 62.0 41 75.6
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.7e-08 62.0 40 75.0
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.7e-08 62.0 34 79.4
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.7e-08 62.0 40 67.5
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 2.2e-08 61.6 40 70.0
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 2.2e-08 61.6 42 66.7
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 2.2e-08 61.6 42 66.7
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.9e-08 61.2 41 75.6
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.9e-08 61.2 41 75.6
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 3.7e-08 60.8 40 72.5
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 3.7e-08 60.8 40 65.0
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 3.7e-08 60.8 40 65.0
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 3.7e-08 60.8 40 65.0
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 4.9e-08 60.5 41 70.7
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 4.9e-08 60.5 41 70.7
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 4.9e-08 60.5 40 75.0
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 6.4e-08 60.1 38 68.4
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 6.4e-08 60.1 47 55.3
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 6.4e-08 60.1 47 55.3
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 8.3e-08 59.7 36 69.4
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-07 58.9 40 70.0
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.4e-07 58.9 40 67.5
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.4e-07 58.9 34 73.5
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.9e-07 58.5 40 67.5
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.9e-07 58.5 40 67.5
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.4e-07 58.2 34 76.5
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 4.1e-07 57.4 40 62.5
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 4.1e-07 57.4 40 62.5
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 4.1e-07 57.4 40 62.5
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 4.1e-07 57.4 40 62.5
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.1e-07 57.4 40 62.5
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 5.4e-07 57.0 32 75.0
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 5.4e-07 57.0 33 75.8
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 7.0e-07 56.6 40 70.0
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 7.0e-07 56.6 40 60.0
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 7.0e-07 56.6 30 76.7
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 7.0e-07 56.6 41 61.0
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 9.2e-07 56.2 40 60.0
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 9.2e-07 56.2 40 65.0
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.2e-06 55.8 31 77.4
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 2.1e-06 55.1 40 62.5
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 2.1e-06 55.1 36 69.4
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 4.6e-06 53.9 41 61.0
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 4.6e-06 53.9 41 61.0
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 4.6e-06 53.9 38 63.2
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 4.6e-06 53.9 40 67.5
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 4.6e-06 53.9 31 71.0
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.0e-06 53.5 39 61.5


User provided reference genes

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