Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.3e-20 102.1 51 100.0
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.1e-18 94.7 50 96.0
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.1e-18 94.7 50 96.0
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 2.4e-17 91.3 50 92.0
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 5.8e-16 86.7 50 84.0
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 7.6e-16 86.3 50 86.0
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 7.6e-16 86.3 50 86.0
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.3e-15 85.5 50 84.0
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 2.9e-15 84.3 50 84.0
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 2.9e-15 84.3 50 84.0
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 2.9e-15 84.3 50 84.0
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 3.8e-15 84.0 50 84.0
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 3.8e-15 84.0 50 82.0
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 6.4e-15 83.2 50 82.0
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 8.4e-15 82.8 50 82.0
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 8.4e-15 82.8 50 80.0
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 1.4e-14 82.0 50 82.0
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.4e-14 82.0 50 76.0
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 1.4e-14 82.0 50 78.0
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.9e-14 81.6 50 80.0
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 1.9e-14 81.6 48 81.2
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 1.9e-14 81.6 50 78.0
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 2.4e-14 81.3 50 80.0
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 2.4e-14 81.3 50 80.0
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 2.4e-14 81.3 50 80.0
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.2e-14 80.9 48 81.2
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.2e-14 80.9 48 81.2
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 3.2e-14 80.9 48 81.2
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 3.2e-14 80.9 48 81.2
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 3.2e-14 80.9 48 81.2
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 3.2e-14 80.9 48 81.2
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 4.2e-14 80.5 48 81.2
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 5.4e-14 80.1 50 78.0
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 5.4e-14 80.1 48 79.2
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 7.1e-14 79.7 50 78.0
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 9.2e-14 79.3 48 81.2
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.2e-13 79.0 48 79.2
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.6e-13 78.6 48 79.2
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.6e-13 78.6 48 79.2
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.7e-13 77.8 48 77.1
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 3.5e-13 77.4 48 77.1
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 4.6e-13 77.0 50 70.0
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 6.0e-13 76.6 48 77.1
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 6.0e-13 76.6 48 77.1
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 6.0e-13 76.6 48 77.1
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 7.8e-13 76.3 45 77.8
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 7.8e-13 76.3 50 74.0
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.3e-12 75.5 45 77.8
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.3e-12 75.5 50 72.0
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 1.7e-12 75.1 50 70.0
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 1.7e-12 75.1 50 70.0
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 1.7e-12 75.1 45 80.0
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 1.7e-12 75.1 50 70.0
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.7e-12 75.1 48 75.0
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 2.3e-12 74.7 48 75.0
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.3e-12 74.7 50 68.0
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 3.0e-12 74.3 50 76.0
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 3.0e-12 74.3 50 66.0
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 3.0e-12 74.3 48 72.9
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 3.9e-12 73.9 50 70.0
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 3.9e-12 73.9 48 75.0
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 6.6e-12 73.2 48 75.0
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 6.6e-12 73.2 48 75.0
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 6.6e-12 73.2 48 75.0
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 6.6e-12 73.2 48 75.0
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 6.6e-12 73.2 50 74.0
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 6.6e-12 73.2 48 75.0
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 6.6e-12 73.2 48 75.0
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 6.6e-12 73.2 50 72.0
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 6.6e-12 73.2 48 75.0
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 8.7e-12 72.8 48 75.0
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 8.7e-12 72.8 48 75.0
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 8.7e-12 72.8 50 64.0
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 8.7e-12 72.8 50 64.0
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 8.7e-12 72.8 50 64.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 8.7e-12 72.8 50 64.0
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 8.7e-12 72.8 50 64.0
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 8.7e-12 72.8 50 64.0
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 8.7e-12 72.8 50 70.0
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 8.7e-12 72.8 48 72.9
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 8.7e-12 72.8 50 64.0
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.5e-11 72.0 48 72.9
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 1.5e-11 72.0 46 76.1
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 1.5e-11 72.0 48 72.9
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.5e-11 72.0 48 70.8
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.5e-11 72.0 48 70.8
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.9e-11 71.6 48 68.8
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.9e-11 71.6 50 70.0
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.5e-11 71.2 48 68.8
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 2.5e-11 71.2 48 70.8
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 2.5e-11 71.2 49 73.5
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 3.3e-11 70.9 48 72.9
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 3.3e-11 70.9 48 72.9
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 4.3e-11 70.5 44 75.0
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 5.6e-11 70.1 48 66.7
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 5.6e-11 70.1 48 68.8
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 9.6e-11 69.3 48 68.8
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 1.3e-10 68.9 48 70.8
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.3e-10 68.9 48 66.7
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.8e-10 67.8 45 66.7
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.8e-10 67.8 45 66.7
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 3.6e-10 67.4 47 68.1
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 4.8e-10 67.0 47 63.8
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 4.8e-10 67.0 47 63.8
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 8.1e-10 66.2 44 75.0
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 8.1e-10 66.2 48 64.6
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 3.4e-08 60.8 46 63.0
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 4.4e-08 60.5 40 75.0
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 5.8e-08 60.1 44 68.2
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 9.9e-08 59.3 50 58.0
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.7e-07 58.5 42 69.0
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 8.4e-07 56.2 50 56.0
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 1.9e-06 55.1 33 72.7
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 4.2e-06 53.9 45 62.2
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 5.4e-06 53.5 47 53.2


User provided reference genes

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