Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 4.7e-244 847.4 429 100.0
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 9.2e-232 806.6 420 96.9
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.0e-230 803.1 417 97.1
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 5.1e-230 800.8 417 97.1
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.0e-226 788.9 417 95.7
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 6.2e-220 767.3 421 92.6
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 2.0e-202 709.1 422 86.7
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 2.6e-202 708.8 431 82.4
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 7.9e-199 697.2 423 86.3
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 3.0e-198 695.3 421 82.9
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 6.7e-198 694.1 420 82.9
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 8.7e-198 693.7 421 82.9
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 5.6e-197 691.0 421 81.9
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 1.8e-195 686.0 423 81.8
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 3.1e-195 685.3 421 81.2
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 4.9e-193 677.9 420 80.7
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 5.5e-192 674.5 421 79.6
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 5.5e-192 674.5 421 81.0
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 7.1e-192 674.1 421 80.3
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 1.2e-191 673.3 423 81.1
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 2.1e-191 672.5 421 81.2
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 2.7e-191 672.2 421 81.2
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 2.7e-191 672.2 423 80.1
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 4.6e-191 671.4 421 80.3
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 1.0e-190 670.2 421 79.1
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.3e-190 669.8 421 79.1
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.3e-190 669.8 421 79.1
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 2.3e-190 669.1 421 80.5
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 1.9e-189 666.0 421 80.5
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 5.7e-189 664.5 423 79.0
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 9.7e-189 663.7 421 78.1
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 1.3e-188 663.3 422 79.6
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 3.7e-188 661.8 421 79.1
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 6.3e-188 661.0 421 78.9
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.4e-187 659.8 424 78.8
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.8e-187 659.4 421 80.0
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 9.0e-187 657.1 421 79.3
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 2.6e-186 655.6 421 79.1
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 5.9e-186 654.4 421 78.9
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 3.2e-184 648.7 428 78.0
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 1.6e-183 646.4 438 76.7
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 2.7e-183 645.6 457 73.1
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 4.6e-183 644.8 452 74.6
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 2.3e-182 642.5 420 76.7
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 3.0e-182 642.1 421 76.5
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 8.8e-182 640.6 421 78.4
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 1.1e-181 640.2 423 77.3
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 1.5e-181 639.8 420 78.3
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 2.4e-179 632.5 421 76.5
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 4.1e-179 631.7 421 76.2
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 4.1e-179 631.7 427 74.7
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 1.2e-178 630.2 427 74.7
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 1.5e-178 629.8 428 74.3
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 2.6e-178 629.0 427 74.5
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 7.7e-178 627.5 421 77.2
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 1.7e-177 626.3 420 74.5
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 3.8e-177 625.2 421 76.7
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 5.0e-177 624.8 425 74.6
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 2.5e-176 622.5 427 73.5
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 5.5e-176 621.3 421 73.9
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 7.2e-176 620.9 421 75.1
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 7.2e-176 620.9 421 75.1
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.6e-175 619.8 420 78.6
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.0e-174 617.1 422 74.6
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 1.4e-174 616.7 420 73.3
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 2.3e-174 615.9 420 73.6
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 6.7e-174 614.4 422 74.2
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 8.8e-174 614.0 431 72.2
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 4.4e-173 611.7 421 73.2
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 6.3e-172 607.8 421 74.6
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 4.1e-171 605.1 422 73.7
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 4.5e-170 601.7 422 74.2
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 7.7e-170 600.9 423 73.3
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 1.7e-169 599.7 422 72.7
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 4.2e-168 595.1 422 71.6
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 5.5e-168 594.7 422 71.6
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 7.2e-168 594.3 421 73.6
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 7.2e-168 594.3 422 72.0
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 7.2e-168 594.3 422 72.0
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 7.2e-168 594.3 422 72.0
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 9.4e-168 594.0 367 81.5
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 1.8e-166 589.7 422 74.4
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 3.9e-166 588.6 422 71.3
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 8.2e-164 580.9 477 65.2
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 8.2e-164 580.9 380 76.3
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 5.3e-163 578.2 432 69.0
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 2.6e-162 575.9 420 71.7
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 6.3e-156 554.7 421 69.6
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 2.0e-154 549.7 319 87.8
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 2.0e-154 549.7 421 68.9
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 3.5e-154 548.9 390 74.6
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 2.9e-153 545.8 413 69.0
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.5e-152 543.5 393 72.0
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 2.5e-152 542.7 421 67.7
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 9.4e-152 540.8 422 67.1
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.4e-150 537.0 422 67.1
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 2.3e-150 536.2 421 67.9
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 8.8e-150 534.3 320 83.8
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 1.5e-149 533.5 438 65.8
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 2.1e-143 513.1 522 55.7
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 5.2e-142 508.4 331 76.1
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 4.1e-139 498.8 307 80.5
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 3.9e-137 492.3 428 62.1
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 4.9e-132 475.3 342 68.7
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 1.2e-130 470.7 282 84.4
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 4.3e-128 462.2 807 39.2
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 3.6e-127 459.1 314 75.2
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 6.2e-127 458.4 421 58.4
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 3.8e-108 396.0 319 61.8
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 5.1e-105 385.6 427 52.0
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 2.1e-103 380.2 413 51.8
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 1.5e-101 374.0 397 53.9
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 4.4e-101 372.5 396 53.3
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 9.9e-101 371.3 397 53.4
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 4.2e-99 365.9 247 76.5
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 5.4e-99 365.5 397 53.1
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 3.0e-97 359.8 389 52.4
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 2.5e-96 356.7 422 48.3
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 5.6e-96 355.5 389 51.7
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 3.1e-94 349.7 395 50.9
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 3.2e-91 339.7 389 50.6
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 1.6e-90 337.4 355 53.5
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 4.3e-88 329.3 304 56.9
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 2.1e-87 327.0 337 53.7
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 2.8e-87 326.6 355 51.3
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 8.4e-76 288.5 439 41.7
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 4.2e-75 286.2 363 48.2
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 3.5e-74 283.1 174 81.0
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 3.9e-73 279.6 186 76.9
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 4.5e-69 266.2 434 38.9
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.4e-62 244.6 194 66.5
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 7.2e-59 232.3 296 47.6
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 2.2e-52 210.7 196 56.6
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 3.5e-37 160.2 100 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 4.2e-35 153.3 372 32.0
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 1.2e-32 145.2 130 62.3
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 4.4e-32 143.3 104 65.4
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 4.4e-32 143.3 142 53.5
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 2.9e-28 130.6 465 27.7
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 1.4e-14 85.1 62 66.1
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 2.3e-09 67.8 109 36.7
SEGI_07227 Sequoiadendron giganteum HOM05D001663 ORTHO05D015595 1.5e-08 65.1 81 42.0


User provided reference genes

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