Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.4e-115 419.9 241 100.0
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.1e-80 302.0 243 70.8
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.9e-78 295.4 242 76.4
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 5.1e-78 295.0 242 76.4
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.3e-77 291.2 242 76.0
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.6e-77 290.8 242 72.7
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 6.7e-54 214.9 276 56.9
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 4.2e-48 195.7 249 59.4
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 4.8e-44 182.2 256 52.7
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.1e-43 181.0 246 45.5
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.0e-41 174.5 228 46.9
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 2.2e-41 173.3 255 55.3
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 2.9e-41 172.9 263 42.2
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 8.5e-41 171.4 265 40.8
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.5e-40 169.9 149 61.7
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 7.2e-40 168.3 230 49.6
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 4.3e-37 159.1 252 41.7
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.1e-35 154.5 254 48.8
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 3.1e-35 152.9 238 43.3
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 3.1e-35 152.9 236 43.2
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 5.3e-35 152.1 141 56.7
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 9.0e-35 151.4 236 42.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.4e-34 149.4 274 40.1
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 5.0e-33 145.6 256 36.3
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 5.0e-33 145.6 249 39.4
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.4e-32 144.1 125 60.0
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.6e-31 140.6 244 44.3
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.7e-31 139.8 141 53.9
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.7e-31 139.8 132 56.1
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 4.6e-31 139.0 137 54.7
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 6.1e-31 138.7 139 55.4
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 7.9e-31 138.3 140 55.0
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.0e-30 137.9 139 54.0
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 1.0e-30 137.9 129 55.8
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.4e-30 137.5 152 50.7
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.8e-30 137.1 151 51.7
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.8e-30 137.1 151 51.7
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 2.3e-30 136.7 135 56.3
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 2.3e-30 136.7 154 51.9
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 2.3e-30 136.7 154 51.9
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 3.9e-30 136.0 149 52.3
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 3.9e-30 136.0 119 59.7
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 3.9e-30 136.0 115 60.0
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.1e-30 135.6 225 39.1
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 6.7e-30 135.2 118 61.0
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.5e-29 134.0 125 57.6
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 1.5e-29 134.0 159 52.8
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 9.7e-29 131.3 136 50.0
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 2.2e-28 130.2 128 55.5
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 2.8e-28 129.8 240 41.2
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 3.7e-28 129.4 114 58.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 4.8e-28 129.0 118 59.3
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 6.3e-28 128.6 136 52.9
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.1e-27 127.9 145 50.3
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.4e-27 127.5 245 42.9
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-27 127.5 226 39.8
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-27 127.1 235 43.8
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.1e-27 126.3 114 58.8
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.2e-26 124.4 132 51.5
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 2.0e-26 123.6 120 58.3
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 5.9e-26 122.1 145 49.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.2e-25 120.2 112 57.1
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 2.9e-25 119.8 114 54.4
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 3.8e-25 119.4 128 50.8
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 8.5e-25 118.2 112 53.6
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.1e-24 117.9 113 54.9
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.9e-24 117.1 140 50.0
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 9.4e-24 114.8 185 41.1
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.1e-23 113.6 234 36.3
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.7e-23 113.2 230 36.1
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 6.1e-23 112.1 115 53.9
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 7.9e-23 111.7 112 50.0
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 7.9e-23 111.7 127 44.9
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 3.0e-22 109.8 62 79.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 3.0e-22 109.8 148 44.6
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.9e-22 109.4 111 54.1
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.9e-22 109.4 125 52.0
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.2e-22 109.0 110 58.2
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 6.7e-22 108.6 92 57.6
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.1e-21 107.8 191 39.3
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.1e-21 107.8 127 45.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.0e-21 107.1 110 56.4
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.0e-21 107.1 123 49.6
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.6e-21 106.7 111 52.3
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.3e-21 106.3 94 56.4
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.4e-21 105.9 111 52.3
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.3e-20 104.4 72 68.1
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.3e-20 104.4 72 68.1
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.7e-20 104.0 212 35.4
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.8e-20 103.2 209 34.4
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 3.7e-20 102.8 230 35.2
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 6.3e-20 102.1 114 50.0
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 6.3e-20 102.1 132 45.5
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.4e-19 100.9 111 53.2
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-19 100.5 136 44.9
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.8e-19 100.5 136 44.9
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.4e-19 100.1 144 41.7
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 2.4e-19 100.1 124 46.8
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.1e-19 99.4 136 44.9
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 7.0e-19 98.6 113 49.6
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 9.1e-19 98.2 94 54.3
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-18 97.8 119 45.4
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 2.0e-18 97.1 89 56.2
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.0e-18 97.1 125 45.6
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 2.6e-18 96.7 188 35.6
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.5e-18 96.3 119 44.5
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 3.5e-18 96.3 110 50.9
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.7e-17 94.0 119 43.7
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 2.2e-17 93.6 129 38.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 2.2e-17 93.6 78 57.7
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 5.0e-17 92.4 79 57.0
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 6.5e-17 92.0 125 42.4
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.5e-17 91.7 119 42.9
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 8.5e-17 91.7 112 47.3
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.1e-16 91.3 141 44.0
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-16 91.3 119 42.9
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.9e-16 90.5 61 67.2
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.9e-16 90.5 75 57.3
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.5e-16 90.1 136 44.9
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 3.2e-16 89.7 119 42.0
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.4e-16 88.2 119 41.2
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 2.1e-15 87.0 88 53.4
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 2.1e-15 87.0 88 53.4
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 6.1e-15 85.5 114 43.9
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 8.0e-15 85.1 163 36.2
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.4e-14 84.3 120 38.3
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 3.0e-14 83.2 140 43.6
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 4.0e-14 82.8 113 46.9
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 8.8e-14 81.6 137 39.4
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.2e-13 81.3 111 41.4
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 4.4e-13 79.3 88 50.0
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 5.7e-13 79.0 110 44.5
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 7.5e-13 78.6 74 58.1
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 9.7e-13 78.2 110 44.5
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.3e-12 77.8 67 56.7
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 8.2e-12 75.1 54 63.0
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 1.8e-11 73.9 88 47.7
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.8e-11 73.9 111 43.2
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 2.4e-11 73.6 46 67.4
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 5.3e-11 72.4 129 41.9
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 2.7e-10 70.1 59 57.6
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.8e-09 66.2 78 50.0
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 5.0e-09 65.9 79 50.6
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 5.0e-09 65.9 79 50.6
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.5e-08 64.3 132 34.8
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 1.5e-08 64.3 97 40.2
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 1.9e-08 63.9 45 60.0
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 4.2e-08 62.8 131 38.9
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 1.2e-07 61.2 42 66.7
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 4.7e-07 59.3 126 34.9
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 4.7e-07 59.3 119 37.0
Atru.chr3.63 Acer truncatum HOM05D004520 ORTHO05D005520 6.1e-07 58.9 106 39.6
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 6.1e-07 58.9 74 44.6
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 8.0e-07 58.5 141 37.6
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 2.3e-06 57.0 113 38.1
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 2.3e-06 57.0 121 38.0
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 5.2e-06 55.8 113 34.5
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 6.8e-06 55.5 116 31.9
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 8.8e-06 55.1 111 33.3
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 8.8e-06 55.1 116 34.5
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 8.8e-06 55.1 111 39.6


User provided reference genes

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