Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0239741 Rosa chinensis HOM05D000997 ORTHO05D000828 9.0e-19 95.9 48 100.0
FAN08G2208 Fragaria x ananassa HOM05D000997 ORTHO05D000828 1.1e-11 72.4 40 87.5
FAN13G1962 Fragaria x ananassa HOM05D000997 ORTHO05D000828 4.0e-11 70.5 40 85.0
RcHm_v2.0_Chr7g0239761 Rosa chinensis HOM05D000997 ORTHO05D000828 5.5e-08 60.1 30 90.0
MELO3C011365.2 Cucumis melo HOM05D000997 ORTHO05D000828 7.1e-08 59.7 30 90.0
CsaV3_1G022930 Cucumis sativus L. HOM05D000997 ORTHO05D000828 7.1e-08 59.7 30 90.0
Carub.0002s2496 Capsella rubella HOM05D000997 ORTHO05D000828 9.3e-08 59.3 34 79.4
Duzib041G0081 Durio zibethinus HOM05D000997 ORTHO05D000828 9.3e-08 59.3 30 86.7
Gohir.D05G230800 Gossypium hirsutum HOM05D000997 ORTHO05D000828 9.3e-08 59.3 30 86.7
Gorai.009G238900 Gossypium raimondii HOM05D000997 ORTHO05D000828 9.3e-08 59.3 30 86.7
Potri.002G094100 Populus trichocarpa HOM05D000997 ORTHO05D000828 9.3e-08 59.3 30 86.7
Thecc.08G110100 Theobroma cacao HOM05D000997 ORTHO05D000828 9.3e-08 59.3 30 86.7
Duzib093G0503 Durio zibethinus HOM05D000997 ORTHO05D000828 1.2e-07 58.9 30 86.7
Gohir.A05G228300 Gossypium hirsutum HOM05D000997 ORTHO05D000828 1.2e-07 58.9 30 83.3
ClCG08G010980 Citrullus lanatus HOM05D000997 ORTHO05D000828 1.6e-07 58.5 30 86.7
Eucgr.F00494 Eucalyptus grandis HOM05D000997 ORTHO05D000828 1.6e-07 58.5 30 86.7
Gohir.D06G039000 Gossypium hirsutum HOM05D000997 ORTHO05D000828 1.6e-07 58.5 30 86.7
Gorai.010G043300 Gossypium raimondii HOM05D000997 ORTHO05D000828 1.6e-07 58.5 30 86.7
TWI12G1068 Tripterygium wilfordii HOM05D000997 ORTHO05D000828 1.6e-07 58.5 30 83.3
AT1G78070 Arabidopsis thaliana HOM05D000997 ORTHO05D000828 2.1e-07 58.2 34 76.5
Ca_15235_v3 Cicer arietinum L. HOM05D000997 ORTHO05D000828 2.1e-07 58.2 30 83.3
FvH4_5g37830 Fragaria vesca HOM05D000997 ORTHO05D000828 2.1e-07 58.2 30 86.7
Psat5g137560 Pisum sativum HOM05D000997 ORTHO05D000828 2.1e-07 58.2 30 83.3
Cpa.g.sc36.111 Carica papaya HOM05D000997 ORTHO05D000828 2.7e-07 57.8 30 83.3
Duzib116G0846 Durio zibethinus HOM05D000997 ORTHO05D000828 2.7e-07 57.8 34 76.5
QL12p036182 Quercus lobata HOM05D000997 ORTHO05D000828 2.7e-07 57.8 29 82.8
THA.LOC104800159 Tarenaya hassleriana HOM05D000997 ORTHO05D000828 2.7e-07 57.8 30 83.3
TWI56G0764 Tripterygium wilfordii HOM05D000997 ORTHO05D000828 2.7e-07 57.8 30 83.3
Thhalv10018538m.g Eutrema salsugineum HOM05D000997 ORTHO05D000828 3.5e-07 57.4 30 83.3
Manes.02G154600 Manihot esculenta HOM05D000997 ORTHO05D000828 3.5e-07 57.4 30 83.3
TPR.G35209 Trifolium pratense HOM05D000997 ORTHO05D000828 3.5e-07 57.4 30 83.3
AL2G38360 Arabidopsis lyrata HOM05D000997 ORTHO05D000828 4.6e-07 57.0 34 73.5
BolC6t40225H Brassica oleracea HOM05D000997 ORTHO05D000828 4.6e-07 57.0 30 83.3
CiPaw.05G236100 Carya illinoinensis HOM05D000997 ORTHO05D000828 4.6e-07 57.0 30 83.3
Ciclev10001120m.g Citrus clementina HOM05D000997 ORTHO05D000828 4.6e-07 57.0 30 80.0
FAN04G0823 Fragaria x ananassa HOM05D000997 ORTHO05D000828 4.6e-07 57.0 29 86.2
Lj1g0027169 Lotus japonicus HOM05D000997 ORTHO05D000828 4.6e-07 57.0 30 80.0
Medtr3g074070 Medicago truncatula HOM05D000997 ORTHO05D000828 4.6e-07 57.0 30 83.3
Potri.005G168600 Populus trichocarpa HOM05D000997 ORTHO05D000828 4.6e-07 57.0 30 80.0
RcHm_v2.0_Chr7g0239811 Rosa chinensis HOM05D000997 ORTHO05D000828 4.6e-07 57.0 30 83.3
Sp5g33200 Schrenkiella parvula HOM05D000997 ORTHO05D000828 4.6e-07 57.0 30 83.3
arahy.Tifrunner.gnm1.ann1.B8KEMK Arachis hypogaea HOM05D000997 ORTHO05D000828 6.0e-07 56.6 30 76.7
arahy.Tifrunner.gnm1.ann1.WIC1DS Arachis hypogaea HOM05D000997 ORTHO05D000828 6.0e-07 56.6 30 76.7
BcaB03g15972 Brassica carinata HOM05D000997 ORTHO05D000828 6.0e-07 56.6 30 80.0
CSS0019061 Camellia sinensis var. sinensis HOM05D000997 ORTHO05D000828 6.0e-07 56.6 30 83.3
Gohir.A06G037600 Gossypium hirsutum HOM05D000997 ORTHO05D000828 6.0e-07 56.6 30 83.3
Lj4A720G63 Lonicera japonica HOM05D000997 ORTHO05D000828 6.0e-07 56.6 30 83.3
Aa31LG4G8110 Aethionema arabicum HOM05D000997 ORTHO05D000828 7.9e-07 56.2 30 80.0
Cfa015913 Carpinus fangiana HOM05D000997 ORTHO05D000828 7.9e-07 56.2 30 83.3
CsaV3_4G028680 Cucumis sativus L. HOM05D000997 ORTHO05D000828 7.9e-07 56.2 30 83.3
Oeu024549.1 Olea europaea HOM05D000997 ORTHO05D000828 7.9e-07 56.2 30 83.3
FAN18G0422 Fragaria x ananassa HOM05D000997 ORTHO05D000828 1.0e-06 55.8 29 82.8
TAR381G0193 Trochodendron aralioides HOM05D000997 ORTHO05D000828 1.0e-06 55.8 30 80.0
Actinidia33146 Actinidia chinensis HOM05D000997 ORTHO05D000828 1.8e-06 55.1 32 75.0
BcaC08g47380 Brassica carinata HOM05D000997 ORTHO05D000828 1.8e-06 55.1 29 82.8
C06p52020 Brassica napus HOM05D000997 ORTHO05D000828 1.8e-06 55.1 29 82.8
CANSAT25G1691 Cannabis sativa HOM05D000997 ORTHO05D000828 1.8e-06 55.1 30 76.7
Haze_00580 Corylus avellana HOM05D000997 ORTHO05D000828 1.8e-06 55.1 30 80.0
MELO3C010423.2 Cucumis melo HOM05D000997 ORTHO05D000828 1.8e-06 55.1 30 80.0
Migut.N02913 Erythranthe guttata HOM05D000997 ORTHO05D000828 1.8e-06 55.1 30 80.0
Lj4A716T75 Lonicera japonica HOM05D000997 ORTHO05D000828 1.8e-06 55.1 30 80.0
Lalb_Chr03g0041201 Lupinus albus HOM05D000997 ORTHO05D000828 1.8e-06 55.1 30 73.3
PSO210G0693 Papaver somniferum HOM05D000997 ORTHO05D000828 1.8e-06 55.1 30 80.0
PSO447G0297 Papaver somniferum HOM05D000997 ORTHO05D000828 1.8e-06 55.1 30 80.0
Sed0014160 Sechium edule HOM05D000997 ORTHO05D000828 1.8e-06 55.1 30 80.0
TAR625G0978 Trochodendron aralioides HOM05D000997 ORTHO05D000828 1.8e-06 55.1 29 82.8
Aqoxy6G00588_Aqoxy6G00589 Aquilegia oxysepala HOM05D000997 ORTHO05D000828 2.3e-06 54.7 30 80.0
Lj4A106G66 Lonicera japonica HOM05D000997 ORTHO05D000828 2.3e-06 54.7 30 80.0
Manes.18G069100 Manihot esculenta HOM05D000997 ORTHO05D000828 2.3e-06 54.7 29 79.3
Prupe.1G513500 Prunus persica HOM05D000997 ORTHO05D000828 2.3e-06 54.7 34 70.6
Atru.chr13.1233 Acer truncatum HOM05D000997 ORTHO05D000828 3.0e-06 54.3 30 76.7
Peaxi162Scf00041g00054 Petunia axillaris HOM05D000997 ORTHO05D000828 3.0e-06 54.3 30 80.0
PGR042G0258 Punica granatum HOM05D000997 ORTHO05D000828 3.0e-06 54.3 30 80.0
Sc01g0000140 Simmondsia chinensis HOM05D000997 ORTHO05D000828 3.0e-06 54.3 30 80.0
Sc01g0000270 Simmondsia chinensis HOM05D000997 ORTHO05D000828 3.0e-06 54.3 30 80.0
THA.LOC104816900 Tarenaya hassleriana HOM05D000997 ORTHO05D000828 3.0e-06 54.3 34 73.5
Actinidia10307 Actinidia chinensis HOM05D000997 ORTHO05D000828 3.9e-06 53.9 30 80.0
A07p43300 Brassica napus HOM05D000997 ORTHO05D000828 3.9e-06 53.9 30 76.7
BraA07t31851Z Brassica rapa HOM05D000997 ORTHO05D000828 3.9e-06 53.9 30 76.7
Actinidia30756 Actinidia chinensis HOM05D000997 ORTHO05D000828 5.1e-06 53.5 30 80.0
MD08G1180000 Malus domestica HOM05D000997 ORTHO05D000828 5.1e-06 53.5 30 76.7
Nitab4.5_0000469g0040 Nicotiana tabacum HOM05D000997 ORTHO05D000828 5.1e-06 53.5 30 80.0
Hund26951 Selenicereus undatus HOM05D000997 ORTHO05D000828 5.1e-06 53.5 29 82.8
Solyc04g072890.4 Solanum lycopersicum HOM05D000997 ORTHO05D000828 5.1e-06 53.5 30 80.0
Sopen04g029060 Solanum pennellii HOM05D000997 ORTHO05D000828 5.1e-06 53.5 30 80.0
PGSC0003DMG400009474 Solanum tuberosum HOM05D000997 ORTHO05D000828 5.1e-06 53.5 30 80.0
vmacro21236 Vaccinium macrocarpon HOM05D000997 ORTHO05D000828 5.1e-06 53.5 30 76.7
Glyma.04G104200 Glycine max HOM05D000997 ORTHO05D000828 6.7e-06 53.1 30 76.7
Glyma.06G105200 Glycine max HOM05D000997 ORTHO05D000828 6.7e-06 53.1 30 76.7
Phvul.009G029400 Phaseolus vulgaris HOM05D000997 ORTHO05D000828 6.7e-06 53.1 30 76.7
unitig_8.g4835 Utricularia gibba HOM05D000997 ORTHO05D000828 6.7e-06 53.1 29 79.3
unitig_578.g16205 Utricularia gibba HOM05D000997 ORTHO05D000828 8.7e-06 52.8 33 72.7


User provided reference genes

Program Settings