Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 3.0e-72 275.0 134 100.0
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 2.0e-68 262.3 133 95.5
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 3.2e-66 255.0 133 93.2
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 6.1e-65 250.8 133 90.2
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 6.1e-65 250.8 133 90.2
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.8e-64 249.2 133 89.5
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.3e-64 248.8 133 89.5
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 5.2e-64 247.7 133 89.5
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 1.8e-56 222.6 133 77.4
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 1.8e-56 222.6 133 79.7
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 9.8e-55 216.9 133 72.9
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.3e-54 216.5 133 74.4
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 2.2e-54 215.7 132 75.0
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 2.8e-54 215.3 133 75.2
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 3.7e-54 214.9 133 72.2
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 1.1e-53 213.4 131 77.9
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 1.1e-53 213.4 132 72.7
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.2e-52 209.9 133 72.2
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 1.6e-52 209.5 133 72.2
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 2.0e-52 209.1 133 72.2
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.7e-52 208.8 132 71.2
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 7.7e-52 207.2 133 70.7
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.0e-51 206.8 132 70.5
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 1.7e-51 206.1 132 71.2
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.7e-51 206.1 133 71.4
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 2.9e-51 205.3 133 74.4
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 3.8e-51 204.9 133 69.9
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 5.0e-51 204.5 133 67.7
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 8.5e-51 203.8 132 70.5
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 8.5e-51 203.8 132 72.0
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 8.5e-51 203.8 133 67.7
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 8.5e-51 203.8 132 68.9
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 1.1e-50 203.4 133 69.9
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 1.1e-50 203.4 133 69.9
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 1.1e-50 203.4 133 70.7
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 1.9e-50 202.6 133 69.2
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 1.9e-50 202.6 133 69.2
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 3.2e-50 201.8 133 69.9
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 3.2e-50 201.8 133 69.2
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 4.2e-50 201.4 132 70.5
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 4.2e-50 201.4 133 69.9
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 4.2e-50 201.4 133 69.2
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 7.2e-50 200.7 132 68.9
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 1.2e-49 199.9 133 69.2
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 1.2e-49 199.9 132 68.9
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 1.2e-49 199.9 133 69.2
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.6e-49 199.5 133 68.4
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.6e-49 199.5 134 70.1
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 2.1e-49 199.1 132 67.4
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 2.1e-49 199.1 133 69.2
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.1e-49 199.1 132 68.9
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 2.7e-49 198.7 132 66.7
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 2.7e-49 198.7 133 68.4
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.7e-49 198.7 133 67.7
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.7e-49 198.7 133 66.9
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.7e-49 198.7 133 66.9
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 3.6e-49 198.4 134 70.1
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 3.6e-49 198.4 133 69.2
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 4.7e-49 198.0 133 69.2
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 4.7e-49 198.0 133 67.7
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 6.1e-49 197.6 132 66.7
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 6.1e-49 197.6 132 65.2
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 8.0e-49 197.2 134 69.4
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 8.0e-49 197.2 133 69.2
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 1.0e-48 196.8 134 69.4
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.0e-48 196.8 134 69.4
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.4e-48 196.4 133 66.9
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 1.4e-48 196.4 132 68.2
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 2.3e-48 195.7 132 71.2
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 3.0e-48 195.3 133 67.7
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 5.2e-48 194.5 133 66.9
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.8e-48 194.1 133 65.4
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.8e-48 194.1 133 65.4
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.5e-47 193.0 132 64.4
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 2.6e-47 192.2 133 67.7
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 3.4e-47 191.8 133 68.4
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 7.5e-47 190.7 133 64.7
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 9.8e-47 190.3 133 67.7
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 9.8e-47 190.3 131 65.6
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 1.3e-46 189.9 133 66.2
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.3e-46 189.9 133 65.4
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 1.3e-46 189.9 133 64.7
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.7e-46 189.5 133 65.4
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 1.7e-46 189.5 133 65.4
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 2.2e-46 189.1 133 64.7
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.8e-46 188.7 132 65.9
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 3.7e-46 188.3 133 65.4
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 3.1e-45 185.3 133 61.7
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 4.1e-45 184.9 133 63.2
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 2.0e-44 182.6 133 61.7
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 2.0e-44 182.6 133 62.4
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 2.7e-44 182.2 133 62.4
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 3.5e-44 181.8 132 62.9
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 4.5e-44 181.4 133 62.4
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 4.5e-44 181.4 132 63.6
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 5.9e-44 181.0 132 61.4
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 1.0e-43 180.3 132 63.6
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.0e-43 180.3 132 63.6
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 2.3e-43 179.1 136 61.8
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 3.8e-43 178.3 133 61.7
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 3.8e-43 178.3 132 63.6
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 3.3e-42 175.3 132 61.4
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 4.2e-42 174.9 133 56.4
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 9.5e-42 173.7 132 59.8
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.6e-41 172.9 132 60.6
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.4e-40 169.9 132 59.1
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 5.2e-40 167.9 133 58.6
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 1.5e-39 166.4 131 59.5
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 2.0e-39 166.0 132 56.8
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 2.6e-39 165.6 131 61.1
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 5.7e-39 164.5 132 56.8
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 5.7e-39 164.5 133 57.1
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 2.4e-37 159.1 97 71.1
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 4.1e-37 158.3 116 61.2
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 3.5e-36 155.2 131 54.2
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.4e-32 143.3 134 50.7
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.8e-32 142.9 131 49.6
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.2e-32 141.4 131 48.1
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 6.4e-30 134.4 125 52.8
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 5.4e-29 131.3 92 64.1
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.3e-27 125.9 113 50.4
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 6.8e-24 114.4 99 56.6
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 2.8e-17 92.4 127 37.0
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.0e-07 59.7 41 61.0


User provided reference genes

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