Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0238761 Rosa chinensis HOM05D000539 ORTHO05D000592 4.4e-21 103.6 49 100.0
RcHm_v2.0_Chr6g0248241 Rosa chinensis HOM05D000539 ORTHO05D000592 3.7e-20 100.5 49 93.9
RcHm_v2.0_Chr7g0201751 Rosa chinensis HOM05D000539 ORTHO05D000592 3.7e-20 100.5 49 93.9
RcHm_v2.0_Chr4g0414241 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-19 99.0 49 91.8
RcHm_v2.0_Chr5g0072081 Rosa chinensis HOM05D000539 ORTHO05D000592 3.5e-18 94.0 45 93.3
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 3.9e-17 90.5 49 83.7
RcHm_v2.0_Chr3g0495121 Rosa chinensis HOM05D000539 ORTHO05D000592 1.9e-16 88.2 49 79.6
RcHm_v2.0_Chr3g0495531 Rosa chinensis HOM05D000539 ORTHO05D000592 1.9e-16 88.2 49 79.6
RcHm_v2.0_Chr5g0032111 Rosa chinensis HOM05D000539 ORTHO05D000592 2.5e-16 87.8 49 77.6
RcHm_v2.0_Chr2g0141521 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-15 85.1 49 75.5
RcHm_v2.0_Chr6g0255101 Rosa chinensis HOM05D000539 ORTHO05D000592 1.8e-14 81.6 46 76.1
RcHm_v2.0_Chr4g0401821 Rosa chinensis HOM05D000539 ORTHO05D000592 5.2e-14 80.1 50 72.0
RcHm_v2.0_Chr5g0071751 Rosa chinensis HOM05D000539 ORTHO05D000592 5.2e-14 80.1 50 72.0
RcHm_v2.0_Chr1g0325701 Rosa chinensis HOM05D000539 ORTHO05D000592 6.8e-14 79.7 49 71.4
RcHm_v2.0_Chr2g0164701 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-13 77.8 49 69.4
RcHm_v2.0_Chr2g0095661 Rosa chinensis HOM05D000539 ORTHO05D000592 4.9e-12 73.6 48 62.5
RcHm_v2.0_Chr3g0496551 Rosa chinensis HOM05D000539 ORTHO05D000592 6.4e-12 73.2 48 62.5
RcHm_v2.0_Chr6g0261391 Rosa chinensis HOM05D000539 ORTHO05D000592 6.4e-12 73.2 50 66.0
RcHm_v2.0_Chr3g0471941 Rosa chinensis HOM05D000539 ORTHO05D000592 2.4e-11 71.2 50 64.0
RcHm_v2.0_Chr4g0391241 Rosa chinensis HOM05D000539 ORTHO05D000592 2.4e-11 71.2 50 64.0
RcHm_v2.0_Chr3g0494181 Rosa chinensis HOM05D000539 ORTHO05D000592 4.1e-11 70.5 45 66.7
RcHm_v2.0_Chr5g0020841 Rosa chinensis HOM05D000539 ORTHO05D000592 4.1e-11 70.5 50 64.0
RcHm_v2.0_Chr5g0023941 Rosa chinensis HOM05D000539 ORTHO05D000592 4.1e-11 70.5 45 66.7
FvH4_3g21081 Fragaria vesca HOM05D000539 ORTHO05D000592 5.4e-11 70.1 49 55.1
RcHm_v2.0_Chr5g0050961 Rosa chinensis HOM05D000539 ORTHO05D000592 7.0e-11 69.7 45 66.7
FvH4_2g18191 Fragaria vesca HOM05D000539 ORTHO05D000233 1.2e-10 68.9 49 53.1
FvH4_6g20174 Fragaria vesca HOM05D000539 ORTHO05D000592 1.2e-10 68.9 49 55.1
RcHm_v2.0_Chr5g0071361 Rosa chinensis HOM05D000539 ORTHO05D000592 1.2e-10 68.9 49 63.3
RcHm_v2.0_Chr7g0228381 Rosa chinensis HOM05D000539 ORTHO05D000592 1.2e-10 68.9 49 59.2
FAN18G0712 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-10 67.0 49 59.2
RcHm_v2.0_Chr4g0401661 Rosa chinensis HOM05D001255 ORTHO05D022391 4.6e-10 67.0 32 90.6
RcHm_v2.0_Chr2g0140381 Rosa chinensis HOM05D000539 ORTHO05D000592 6.0e-10 66.6 45 62.2
RcHm_v2.0_Chr4g0424911 Rosa chinensis HOM05D000539 ORTHO05D000592 6.0e-10 66.6 51 56.9
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 7.8e-10 66.2 45 62.2
RcHm_v2.0_Chr2g0108851 Rosa chinensis HOM05D000539 ORTHO05D000592 1.3e-09 65.5 44 63.6
RcHm_v2.0_Chr7g0197301 Rosa chinensis HOM05D000539 ORTHO05D000592 1.3e-09 65.5 44 63.6
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-09 65.5 44 63.6
RcHm_v2.0_Chr7g0209041 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-09 65.1 45 62.2
FAN08G0188 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.0e-09 63.5 49 55.1
FAN16G3414 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.0e-09 63.5 49 55.1
FAN02G2287 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.6e-09 63.2 49 55.1
RcHm_v2.0_Chr2g0120801 Rosa chinensis HOM05D000539 ORTHO05D000592 6.6e-09 63.2 45 64.4
RcHm_v2.0_Chr5g0059281 Rosa chinensis HOM05D000539 ORTHO05D000592 6.6e-09 63.2 44 61.4
FvH4_5g25000 Fragaria vesca HOM05D000539 ORTHO05D000592 8.6e-09 62.8 49 55.1
DCAR_032014 Daucus carota HOM05D000539 ORTHO05D000592 1.1e-08 62.4 47 59.6
FAN22G1432 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-08 62.4 49 55.1
RcHm_v2.0_Chr6g0291811 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-08 62.4 45 62.2
FAN22G0206 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.5e-08 62.0 49 55.1
RcHm_v2.0_Chr2g0123101 Rosa chinensis HOM05D000539 ORTHO05D000592 1.5e-08 62.0 42 61.9
RcHm_v2.0_Chr1g0326141 Rosa chinensis HOM05D000539 ORTHO05D000592 3.3e-08 60.8 45 62.2
RcHm_v2.0_Chr3g0481131 Rosa chinensis HOM05D000539 ORTHO05D000592 3.3e-08 60.8 45 62.2
RcHm_v2.0_Chr5g0055741 Rosa chinensis HOM05D000539 ORTHO05D000592 3.3e-08 60.8 45 62.2
FAN18G4025 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.6e-08 60.1 58 48.3
RcHm_v2.0_Chr2g0147501 Rosa chinensis HOM05D000539 ORTHO05D000592 9.5e-08 59.3 45 51.1
RcHm_v2.0_Chr4g0393851 Rosa chinensis HOM05D000539 ORTHO05D000592 9.5e-08 59.3 45 51.1
RcHm_v2.0_Chr4g0407981 Rosa chinensis HOM05D000539 ORTHO05D000592 9.5e-08 59.3 45 51.1
FAN22G1314 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-07 58.9 49 53.1
FAN22G1677 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-07 58.9 49 53.1
FAN03G1758 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.6e-07 58.5 45 55.6
FAN03G2330 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.6e-07 58.5 45 55.6
FAN28G0205 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.6e-07 58.5 49 51.0
RcHm_v2.0_Chr5g0024781 Rosa chinensis HOM05D000539 ORTHO05D000592 2.8e-07 57.8 45 48.9
RcHm_v2.0_Chr6g0299701 Rosa chinensis HOM05D000539 ORTHO05D000592 2.8e-07 57.8 45 60.0
FAN19G2795 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.6e-07 57.4 45 53.3
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 4.7e-07 57.0 45 57.8
RcHm_v2.0_Chr7g0217821 Rosa chinensis HOM05D000054 ORTHO05D008307 4.7e-07 57.0 32 71.9
RcHm_v2.0_Chr5g0045831 Rosa chinensis HOM05D000539 ORTHO05D000592 6.2e-07 56.6 45 57.8
FAN07G0141 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.1e-07 56.2 45 55.6
FAN22G1303 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.1e-07 56.2 45 55.6
FAN23G1554 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.1e-07 56.2 45 55.6
FAN28G2561 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.1e-07 56.2 45 55.6
FAN03G0524 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN04G1988 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN06G0003 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN06G0584 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN06G3425 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN07G0213 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN07G0996 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN07G1063 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN08G0675 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN09G0136 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN12G1285 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN13G0463 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN16G0584 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.1e-06 55.8 45 48.9
FAN16G2445 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN16G3090 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN17G0771 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.1e-06 55.8 45 48.9
FAN17G0974 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN17G3107 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.1e-06 55.8 45 48.9
FAN21G1450 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN22G1565 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.1e-06 55.8 45 48.9
FAN22G1737 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN23G0124 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN23G1482 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN23G1544 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN23G2228 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN23G2368 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN23G2427 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN24G2468 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.1e-06 55.8 45 48.9
FAN25G3640 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN26G0996 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN26G1947 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN26G2944 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN26G3285 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN26G3427 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN26G3431 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN27G2859 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN28G0602 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN28G2174 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
FAN28G2676 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-06 55.8 45 48.9
RcHm_v2.0_Chr5g0072991 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-06 55.8 43 53.5
RcHm_v2.0_Chr7g0229451 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-06 55.8 43 53.5
FvH4_6g20910 Fragaria vesca HOM05D000539 ORTHO05D000592 1.4e-06 55.5 52 53.8
FAN16G1455 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-06 55.5 45 48.9
FAN23G2086 Fragaria x ananassa HOM05D000539 ORTHO05D023197 1.4e-06 55.5 45 48.9
FAN25G3752 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-06 55.5 45 48.9
FvH4_4g15801 Fragaria vesca HOM05D000539 ORTHO05D000592 1.8e-06 55.1 45 48.9
FvH4_3g18051 Fragaria vesca HOM05D000539 ORTHO05D000592 2.3e-06 54.7 45 53.3
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 2.3e-06 54.7 45 53.3
FvH4_6g12431 Fragaria vesca HOM05D000539 ORTHO05D000233 2.3e-06 54.7 44 54.5
FAN08G0784 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-06 54.7 42 54.8
FAN08G1656 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-06 54.7 45 53.3
FAN08G3599 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-06 54.7 45 53.3
FAN09G0062 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-06 54.7 45 53.3
FAN10G1471 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-06 54.7 45 53.3
FAN10G3810 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-06 54.7 45 53.3
RcHm_v2.0_Chr7g0235441 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-06 54.7 43 51.2
FAN18G2247 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.1e-06 54.3 45 53.3
FAN25G0088 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.1e-06 54.3 45 46.7
FAN28G1985 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.1e-06 54.3 48 47.9
RcHm_v2.0_Chr7g0189081 Rosa chinensis HOM05D000539 ORTHO05D000592 3.1e-06 54.3 32 68.8
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 4.0e-06 53.9 43 53.5
FvH4_4g05701 Fragaria vesca HOM05D000539 ORTHO05D000233 4.0e-06 53.9 45 48.9
FvH4_6g31293 Fragaria vesca HOM05D000539 ORTHO05D000233 4.0e-06 53.9 45 48.9
FAN05G3022 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-06 53.9 45 46.7
FAN06G2632 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-06 53.9 45 46.7
FAN06G4635 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-06 53.9 45 46.7
FAN20G0711 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-06 53.9 45 46.7
FAN23G1253 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-06 53.9 45 46.7
FAN25G3215 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-06 53.9 45 46.7
RcHm_v2.0_Chr2g0112151 Rosa chinensis HOM05D000539 ORTHO05D000592 4.0e-06 53.9 50 48.0
RcHm_v2.0_Chr7g0199851 Rosa chinensis HOM05D000539 ORTHO05D000592 5.2e-06 53.5 36 63.9
FvH4_3g31715 Fragaria vesca HOM05D000539 ORTHO05D000592 6.8e-06 53.1 45 51.1
FvH4_4g10052 Fragaria vesca HOM05D000539 ORTHO05D000233 6.8e-06 53.1 45 51.1
FvH4_6g23351 Fragaria vesca HOM05D000539 ORTHO05D000233 6.8e-06 53.1 45 51.1
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 6.8e-06 53.1 43 53.5
FvH4_2g11482 Fragaria vesca HOM05D000539 ORTHO05D000592 8.9e-06 52.8 44 52.3
FvH4_4g10091 Fragaria vesca HOM05D000539 ORTHO05D000592 8.9e-06 52.8 45 51.1
FvH4_6g12903 Fragaria vesca HOM05D000539 ORTHO05D000592 8.9e-06 52.8 41 53.7
FvH4_7g02995 Fragaria vesca HOM05D000539 ORTHO05D000592 8.9e-06 52.8 45 51.1
FAN06G0049 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.9e-06 52.8 42 57.1
FAN12G0214 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.9e-06 52.8 44 52.3
FAN12G1860 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.9e-06 52.8 45 48.9
FAN13G1596 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.9e-06 52.8 44 52.3


User provided reference genes

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