Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 2.8e-129 465.3 237 100.0
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.7e-124 448.7 237 96.2
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 4.6e-124 448.0 237 95.8
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 5.6e-122 441.0 237 94.1
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 7.3e-122 440.7 237 94.1
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 4.6e-100 368.2 234 79.9
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 7.4e-98 360.9 234 76.9
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 5.0e-94 348.2 234 73.9
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 6.5e-94 347.8 234 72.6
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 6.5e-94 347.8 234 74.4
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 2.5e-93 345.9 237 73.8
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 4.2e-93 345.1 234 73.1
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 4.2e-93 345.1 226 72.6
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 5.5e-93 344.7 234 73.1
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 9.4e-93 344.0 234 73.1
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 9.4e-93 344.0 236 74.6
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 1.2e-92 343.6 229 75.1
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 3.6e-92 342.0 237 70.0
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 1.4e-91 340.1 234 70.9
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 1.4e-91 340.1 237 72.2
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 1.4e-91 340.1 232 69.8
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 1.8e-91 339.7 232 71.6
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 1.8e-91 339.7 254 68.9
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 6.7e-91 337.8 234 69.7
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 6.7e-91 337.8 234 70.9
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 8.8e-91 337.4 234 70.9
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 2.5e-90 335.9 233 70.0
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 7.4e-90 334.3 234 71.8
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 1.7e-89 333.2 234 70.9
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 1.7e-89 333.2 234 70.9
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 2.8e-89 332.4 234 66.7
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 6.3e-89 331.3 224 73.7
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 8.2e-89 330.9 234 71.4
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 8.2e-89 330.9 237 70.5
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 1.4e-88 330.1 236 68.2
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 1.4e-88 330.1 230 69.1
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 3.1e-88 328.9 234 65.8
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 4.1e-88 328.6 213 75.6
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 1.0e-86 323.9 223 72.2
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 1.7e-86 323.2 235 69.4
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 2.9e-86 322.4 235 66.0
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 5.0e-86 321.6 235 70.2
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 5.0e-86 321.6 234 68.8
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 5.0e-86 321.6 233 75.5
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 1.4e-85 320.1 236 66.5
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 1.9e-85 319.7 217 72.8
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 3.2e-85 318.9 234 66.2
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 4.2e-85 318.5 221 71.0
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 2.1e-84 316.2 234 67.1
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 4.7e-84 315.1 224 67.9
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 4.7e-84 315.1 236 67.4
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 1.4e-83 313.5 235 66.8
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 1.4e-83 313.5 229 68.6
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 1.8e-83 313.2 234 65.4
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 1.8e-83 313.2 234 67.1
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 8.8e-83 310.8 226 66.8
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 2.0e-82 309.7 236 64.4
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 3.3e-82 308.9 240 64.6
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 3.3e-82 308.9 232 65.5
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 3.3e-82 308.9 236 66.1
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 1.7e-81 306.6 238 65.5
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 2.4e-80 302.8 238 64.3
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 2.4e-80 302.8 234 63.2
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 2.0e-79 299.7 233 64.4
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 2.0e-79 299.7 234 62.8
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 3.5e-79 298.9 228 64.9
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 4.5e-79 298.5 229 63.3
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 7.7e-79 297.7 226 62.8
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 2.9e-78 295.8 240 60.8
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 2.9e-78 295.8 234 60.3
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 8.5e-78 294.3 235 61.3
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 1.9e-77 293.1 231 61.9
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 3.2e-77 292.4 234 60.7
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 1.2e-76 290.4 235 61.3
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 1.2e-76 290.4 229 60.7
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 1.2e-76 290.4 234 59.8
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 1.2e-76 290.4 232 61.2
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 1.6e-76 290.0 226 64.2
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 2.1e-76 289.7 234 60.3
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 2.1e-76 289.7 234 60.3
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 2.7e-76 289.3 234 59.0
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 2.7e-76 289.3 238 61.3
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 8.0e-76 287.7 234 59.4
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 1.0e-75 287.3 234 60.3
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 1.4e-75 287.0 227 65.6
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 1.4e-75 287.0 235 59.6
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 8.8e-75 284.3 229 63.3
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 2.6e-74 282.7 228 59.2
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 5.7e-74 281.6 234 61.1
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 9.7e-74 280.8 214 64.0
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 5.3e-72 275.0 208 63.0
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 5.3e-72 275.0 221 61.1
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 3.8e-70 268.9 218 60.6
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 9.7e-66 254.2 262 51.9
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 1.0e-62 244.2 224 54.9
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 3.0e-59 232.6 229 52.8
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 3.4e-58 229.2 152 73.7
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.7e-57 226.9 156 71.8
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 1.4e-43 180.6 97 92.8
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 2.3e-43 179.9 225 42.7
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 4.0e-43 179.1 139 61.2
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 6.8e-43 178.3 211 42.7
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 2.2e-41 173.3 150 56.0
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 3.7e-41 172.6 156 57.7
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 2.4e-40 169.9 229 41.0
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 4.6e-39 165.6 234 44.0
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 6.4e-33 145.2 216 34.7
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 6.4e-33 145.2 218 36.2
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 5.4e-32 142.1 119 58.8
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 2.1e-31 140.2 215 33.0
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 2.5e-29 133.3 163 46.0
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 1.6e-28 130.6 115 58.3
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 5.6e-21 105.5 72 63.9
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 2.8e-20 103.2 209 32.5
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 2.0e-10 70.5 90 43.3
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 2.0e-10 70.5 90 43.3
MD15G1370600 Malus domestica HOM05D006862 ORTHO05D008726 1.1e-08 64.7 41 70.7


User provided reference genes

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