Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 2017.7 1014 100.0
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1870.9 1014 92.6
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1854.0 1039 90.1
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1842.0 1039 89.5
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1841.2 1050 88.9
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1840.5 1032 90.2
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1754.2 1012 86.4
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1717.2 1015 84.5
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1629.4 1005 80.0
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1610.1 1006 79.8
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1587.4 1014 78.3
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1557.7 1006 78.1
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1555.4 963 79.9
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1554.3 1006 77.3
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1549.6 1021 76.2
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1548.9 1010 76.5
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1544.6 1007 76.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1536.9 1020 76.1
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1534.2 1007 76.5
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1533.9 1008 76.6
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1528.1 1010 75.9
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1524.2 1007 74.9
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1521.9 1009 75.9
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1520.4 1007 75.0
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1508.0 1010 75.0
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1504.2 1009 75.1
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1500.3 1011 75.6
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1498.8 1012 74.1
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1498.0 1012 75.1
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1497.6 1012 74.0
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1496.1 1015 73.9
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1495.7 1012 73.9
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1494.6 1028 73.5
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1490.3 1010 74.5
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1488.0 1007 75.0
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1487.2 1014 74.1
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1485.7 1008 73.7
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1481.1 1017 74.5
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1478.8 1014 73.9
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1478.8 1006 74.7
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1476.1 1008 73.3
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1469.5 1058 71.3
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1469.1 1006 72.5
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1465.3 1011 73.7
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1464.1 1007 73.9
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1461.8 1006 73.1
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1453.7 970 74.9
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1451.4 1005 72.7
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1450.6 1009 72.5
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1446.4 1010 72.0
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1444.5 1005 72.3
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1443.3 1010 72.0
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1439.5 1008 71.9
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1039 71.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1437.2 1037 71.3
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1436.8 1010 71.8
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1436.8 967 75.3
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1436.4 1082 69.2
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1435.6 1011 72.3
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 1010 71.2
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1433.7 925 78.1
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1433.7 1008 71.5
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1432.2 1011 72.0
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1431.4 1017 71.0
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 1009 71.7
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1429.8 1009 71.7
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1429.8 1009 71.6
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1428.7 1009 71.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 1016 71.3
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1424.8 1009 71.4
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1424.1 984 73.1
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1422.9 1019 71.1
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1420.2 1044 70.0
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1419.4 1019 70.8
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1413.3 1008 71.0
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1409.0 1032 70.3
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1404.8 1008 71.2
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1399.4 1024 69.5
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1386.3 1004 70.9
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 1012 69.1
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1378.6 1107 65.0
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1372.1 1011 68.7
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1367.8 1015 68.7
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1363.6 1013 67.5
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1357.0 1028 67.2
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1343.6 984 69.6
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1342.4 1008 69.1
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1337.0 1007 68.9
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1336.6 1013 68.6
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1320.8 1033 67.2
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 1039 65.9
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1313.9 1026 65.8
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1302.7 1012 67.1
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1298.9 1009 66.0
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1295.4 1026 65.0
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1294.3 1025 66.3
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1289.6 989 67.0
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1288.9 813 80.2
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1284.2 964 69.2
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1281.9 1140 58.9
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1280.8 1014 65.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1280.8 1006 66.2
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1269.2 1173 57.5
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1261.1 1038 63.0
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1250.3 1042 63.2
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1250.0 946 67.9
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1245.0 1017 64.9
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1239.2 1011 63.8
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1238.0 914 68.9
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1235.7 1007 65.5
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1230.7 1008 64.1
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1229.5 857 73.2
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1218.8 1005 62.5
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1190.6 1010 60.6
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1187.9 1011 61.3
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1173.3 1011 59.9
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1170.6 988 64.2
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1139.0 902 66.7
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1128.6 943 61.4
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1125.5 857 67.2
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 8.4e-300 1033.9 950 59.1
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.1e-278 962.2 781 64.9
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.3e-276 956.8 873 58.1
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 7.2e-275 951.0 618 76.9
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.6e-271 939.9 1037 50.7
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.0e-265 920.6 1053 49.3
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 3.1e-262 909.1 624 73.2
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 6.3e-255 884.8 983 49.8
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.6e-242 843.6 639 69.0
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 6.1e-242 841.6 1027 46.7
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.1e-238 829.3 1023 46.4
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 3.1e-230 802.7 619 66.7
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.5e-224 783.9 1221 41.3
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.6e-216 756.5 884 45.9
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 3.9e-188 662.9 391 83.6
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.3e-178 631.3 360 85.6
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.3e-164 583.9 389 75.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-157 561.6 437 68.0
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.6e-157 561.2 444 67.1
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 9.1e-153 545.4 584 51.2
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 6.1e-141 506.1 536 53.9
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.0e-112 411.4 237 86.1
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 3.4e-107 394.0 262 76.3
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.7e-103 381.7 205 86.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.9e-103 380.6 279 69.9
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 5.4e-89 333.6 239 70.7
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 3.9e-87 327.4 252 70.2
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.2e-85 322.4 846 29.6
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.9e-78 298.5 162 85.2
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.8e-74 284.3 150 88.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 5.6e-62 243.8 231 55.4
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.8e-59 233.8 170 72.9
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 2.7e-56 224.9 253 52.2
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 6.2e-53 213.8 194 64.4
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.8e-47 195.7 114 76.3
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 6.7e-47 193.7 485 31.1
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-40 172.9 150 58.0
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.9e-40 170.2 90 80.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.4e-39 169.5 126 71.4
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.5e-38 166.0 191 50.8
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 3.4e-35 154.8 131 62.6
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.3e-31 142.1 71 87.3
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 3.1e-28 131.7 77 75.3
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.9e-26 125.2 100 66.0
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 6.5e-26 124.0 83 73.5
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.7e-24 117.9 96 61.5
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.0e-18 100.1 79 65.8
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.0e-18 100.1 79 65.8
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.0e-18 100.1 79 65.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.6e-16 92.8 86 64.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 8.8e-15 87.0 67 55.2
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.3e-10 73.2 57 64.9
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.9e-10 72.0 79 54.4
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 1.9e-09 69.3 65 53.8
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 2.0e-06 59.3 71 53.5


User provided reference genes

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