Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0238281 Rosa chinensis HOM05D014020 ORTHO05D000001 7.2e-89 330.5 160 100.0
RcHm_v2.0_Chr7g0190501 Rosa chinensis HOM05D000002 ORTHO05D000001 5.4e-28 128.3 174 47.7
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 1.6e-11 73.6 84 46.4
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-11 71.6 160 38.1
RcHm_v2.0_Chr3g0496771 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-10 70.9 160 34.4
RcHm_v2.0_Chr3g0465981 Rosa chinensis HOM05D000002 ORTHO05D000001 2.3e-10 69.7 160 36.2
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 5.1e-10 68.6 162 31.5
RcHm_v2.0_Chr2g0129181 Rosa chinensis HOM05D000002 ORTHO05D000001 8.7e-10 67.8 160 35.6
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.1e-09 67.4 85 45.9
CSS0020834 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-09 65.9 159 32.1
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-09 65.9 171 35.7
CSS0029542 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-09 65.9 67 49.3
Dinv15870 Davidia involucrata HOM05D000467 ORTHO05D000379 3.3e-09 65.9 85 43.5
Dinv39044 Davidia involucrata HOM05D000016 ORTHO05D000109 3.3e-09 65.9 85 43.5
CSS0008547 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.7e-09 65.1 171 35.7
CSS0041077 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.4e-09 64.7 105 40.0
CSS0046748 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.4e-09 64.7 166 30.1
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.7e-09 64.3 164 36.0
CSS0017698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-08 63.5 175 33.7
CSS0041837 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-08 63.5 175 33.7
COL.COLO4_24669 Corchorus olitorius HOM05D014020 ORTHO05D000001 1.6e-08 63.5 156 28.8
MD11G1145100 Malus domestica HOM05D000002 ORTHO05D000001 2.2e-08 63.2 62 50.0
CSS0034935 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-08 62.8 160 33.1
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 2.8e-08 62.8 97 44.3
PSO729G0199 Papaver somniferum HOM05D000002 ORTHO05D000001 3.7e-08 62.4 66 45.5
COL.COLO4_12289 Corchorus olitorius HOM05D000002 ORTHO05D000001 4.8e-08 62.0 76 39.5
PSO384G1753 Papaver somniferum HOM05D000002 ORTHO05D000001 6.3e-08 61.6 66 45.5
CSS0015054 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.2e-08 61.2 104 37.5
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-07 60.8 177 32.2
PSO754G0020 Papaver somniferum HOM05D000002 ORTHO05D000001 1.1e-07 60.8 62 46.8
QL08p052300 Quercus lobata HOM05D000002 ORTHO05D000001 1.1e-07 60.8 87 42.5
PSO339G3901 Papaver somniferum HOM05D000002 ORTHO05D000001 1.4e-07 60.5 63 49.2
CSS0020274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-07 60.1 66 48.5
FvH4_6g36662 Fragaria vesca HOM05D025673 ORTHO05D000001 2.4e-07 59.7 56 46.4
PSO541G1410 Papaver somniferum HOM05D000002 ORTHO05D000001 2.4e-07 59.7 54 51.9
COL.COLO4_11301 Corchorus olitorius HOM05D014020 ORTHO05D000001 3.1e-07 59.3 90 34.4
COL.COLO4_22605 Corchorus olitorius HOM05D014020 ORTHO05D000001 3.1e-07 59.3 63 42.9
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 4.1e-07 58.9 160 30.0
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 4.1e-07 58.9 188 31.9
THA.LOC104807900 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 4.1e-07 58.9 159 30.8
CSS0019354 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-07 58.5 160 31.9
CSS0025666 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-07 58.5 151 37.1
CSS0034941 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-07 58.5 158 30.4
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 5.3e-07 58.5 109 36.7
PSO782G0612 Papaver somniferum HOM05D000002 ORTHO05D000001 5.3e-07 58.5 175 34.3
CSS0031686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.9e-07 58.2 160 30.6
CANSAT21G1279 Cannabis sativa HOM05D000002 ORTHO05D000001 6.9e-07 58.2 64 39.1
COL.COLO4_38540 Corchorus olitorius HOM05D026776 ORTHO05D000001 6.9e-07 58.2 101 33.7
Hma1.2p1_0067F.1_g037120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.9e-07 58.2 158 31.6
Nn1g03750 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.9e-07 58.2 60 43.3
PSO541G1536 Papaver somniferum HOM05D000002 ORTHO05D000001 6.9e-07 58.2 102 37.3
MD05G1333300 Malus domestica HOM05D000002 ORTHO05D000001 9.0e-07 57.8 59 49.2
Gorai.013G092800 Gossypium raimondii HOM05D000002 ORTHO05D000001 1.2e-06 57.4 62 43.5
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-06 57.4 184 30.4
PSO063G4382 Papaver somniferum HOM05D000002 ORTHO05D000001 1.2e-06 57.4 64 45.3
PSO541G5397 Papaver somniferum HOM05D000002 ORTHO05D000001 1.2e-06 57.4 64 43.8
Psat4g210200 Pisum sativum HOM05D018610 ORTHO05D000001 1.5e-06 57.0 161 30.4
Dinv03566 Davidia involucrata HOM05D013570 ORTHO05D000001 2.0e-06 56.6 64 43.8
Hma1.2p1_0840F.1_g226720 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.0e-06 56.6 162 30.9
Hma1.2p1_3787F.1_g337595 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.0e-06 56.6 162 30.9
Nn1g06783 Nelumbo nucifera HOM05D023713 ORTHO05D000001 2.0e-06 56.6 71 39.4
CANSAT54G2325 Cannabis sativa HOM05D000002 ORTHO05D000001 2.6e-06 56.2 66 40.9
MD12G1052500 Malus domestica HOM05D000002 ORTHO05D000001 2.6e-06 56.2 182 31.3
Atru.chr7.838 Acer truncatum HOM05D000002 ORTHO05D000001 3.4e-06 55.8 89 34.8
CANSAT25G3406 Cannabis sativa HOM05D024232 ORTHO05D000001 3.4e-06 55.8 61 42.6
COL.COLO4_08663 Corchorus olitorius HOM05D014020 ORTHO05D000001 3.4e-06 55.8 73 38.4
COL.COLO4_18983 Corchorus olitorius HOM05D014020 ORTHO05D000001 3.4e-06 55.8 62 38.7
FvH4_4g05872 Fragaria vesca HOM05D000002 ORTHO05D000001 3.4e-06 55.8 57 45.6
MD12G1020900 Malus domestica HOM05D000103 ORTHO05D000001 3.4e-06 55.8 101 38.6
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 3.4e-06 55.8 85 38.8
Solyc10g038180.3 Solanum lycopersicum HOM05D000002 ORTHO05D000001 3.4e-06 55.8 159 27.7
CSS0016107 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.9e-06 55.1 82 35.4
CSS0025864 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.9e-06 55.1 160 29.4
CSS0047136 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.9e-06 55.1 160 30.0
FvH4_4g05782 Fragaria vesca HOM05D000002 ORTHO05D000001 5.9e-06 55.1 55 47.3
MBI10_g35390_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D000001 5.9e-06 55.1 159 28.9
CSS0045443 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.7e-06 54.7 109 36.7
Lju225C4G4 Lonicera japonica HOM05D000002 ORTHO05D000001 7.7e-06 54.7 55 49.1
Peaxi162Scf00153g01013 Petunia axillaris HOM05D000002 ORTHO05D000001 7.7e-06 54.7 61 37.7
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 7.7e-06 54.7 165 30.3
AagrBONN_evm.TU.Sc2ySwM_340.2104 Anthoceros agrestis HOM05D000002 ORTHO05D000001 1.0e-05 54.3 59 50.8
Nn1g00402 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.0e-05 54.3 63 42.9
PSO384G4697 Papaver somniferum HOM05D000002 ORTHO05D000001 1.0e-05 54.3 63 41.3


User provided reference genes

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