Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0238111 Rosa chinensis HOM05D000141 ORTHO05D013114 7.3e-59 230.3 114 100.0
RcHm_v2.0_Chr2g0142251 Rosa chinensis HOM05D000141 ORTHO05D013114 3.3e-43 178.3 92 94.6
RcHm_v2.0_Chr7g0185441 Rosa chinensis HOM05D000141 ORTHO05D001860 8.1e-42 173.7 92 92.4
FvH4_5g12130 Fragaria vesca HOM05D000141 ORTHO05D001860 2.0e-32 142.5 93 76.3
FAN18G0927 Fragaria x ananassa HOM05D000141 ORTHO05D001860 2.0e-32 142.5 93 76.3
FAN08G0207 Fragaria x ananassa HOM05D000141 ORTHO05D001860 3.4e-32 141.7 93 76.3
FAN13G0310 Fragaria x ananassa HOM05D000141 ORTHO05D001860 9.9e-32 140.2 93 76.3
FAN04G1298 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.3e-31 139.8 93 76.3
FAN18G1630 Fragaria x ananassa HOM05D000141 ORTHO05D001860 2.2e-31 139.0 93 75.3
MD14G1226600 Malus domestica HOM05D000141 ORTHO05D001860 8.1e-26 120.6 91 65.9
Prupe.5G221200 Prunus persica HOM05D000141 ORTHO05D001860 1.2e-24 116.7 91 65.9
TAR374G0639 Trochodendron aralioides HOM05D000141 ORTHO05D001860 6.9e-17 90.9 91 49.5
Dinv15670 Davidia involucrata HOM05D000141 ORTHO05D001860 1.2e-16 90.1 79 59.5
MD06G1216000 Malus domestica HOM05D000141 ORTHO05D001860 4.5e-16 88.2 53 77.4
QL10p025322 Quercus lobata HOM05D000141 ORTHO05D001860 7.6e-16 87.4 92 52.2
Haze_18673 Corylus avellana HOM05D000141 ORTHO05D001860 2.2e-15 85.9 80 55.0
Hma1.2p1_0653F.1_g196300 Hydrangea macrophylla HOM05D000141 ORTHO05D001860 2.2e-15 85.9 79 57.0
Cfa019777 Carpinus fangiana HOM05D000141 ORTHO05D001860 3.8e-15 85.1 80 53.8
Nitab4.5_0001194g0050 Nicotiana tabacum HOM05D000141 ORTHO05D001860 3.8e-15 85.1 77 54.5
Actinidia39829 Actinidia chinensis HOM05D000141 ORTHO05D001860 6.4e-15 84.3 77 55.8
Dinv28101 Davidia involucrata HOM05D000141 ORTHO05D001860 6.4e-15 84.3 83 53.0
Nitab4.5_0007985g0030 Nicotiana tabacum HOM05D000141 ORTHO05D001860 6.4e-15 84.3 77 53.2
vmacro17717 Vaccinium macrocarpon HOM05D000141 ORTHO05D001860 8.4e-15 84.0 80 53.8
TAR375G0245 Trochodendron aralioides HOM05D000141 ORTHO05D013114 4.2e-14 81.6 85 50.6
Ciclev10023895m.g Citrus clementina HOM05D000141 ORTHO05D001860 1.2e-13 80.1 72 51.4
TWI81G0735 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 2.7e-13 79.0 67 52.2
TWI60G0408 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 3.5e-13 78.6 67 53.7
Lj9C426T14 Lonicera japonica HOM05D000141 ORTHO05D001860 4.6e-13 78.2 74 52.7
Nn3g18610 Nelumbo nucifera HOM05D000141 ORTHO05D001860 6.0e-13 77.8 87 46.0
Duzib084G1388 Durio zibethinus HOM05D000141 ORTHO05D001860 2.3e-12 75.9 60 55.0
Nitab4.5_0000208g0230 Nicotiana tabacum HOM05D000141 ORTHO05D001860 3.0e-12 75.5 112 42.9
PGSC0003DMG401028776 Solanum tuberosum HOM05D000141 ORTHO05D013114 6.7e-12 74.3 94 46.8
RcHm_v2.0_Chr4g0436491 Rosa chinensis HOM05D000141 ORTHO05D013114 8.7e-12 73.9 41 87.8
Solyc12g036810.3 Solanum lycopersicum HOM05D000141 ORTHO05D001860 8.7e-12 73.9 89 47.2
Potri.015G047400 Populus trichocarpa HOM05D000141 ORTHO05D001860 1.9e-11 72.8 86 43.0
Oeu058029.1 Olea europaea HOM05D000141 ORTHO05D001860 2.5e-11 72.4 78 44.9
Migut.D01472 Erythranthe guttata HOM05D000141 ORTHO05D001860 3.3e-11 72.0 60 55.0
Peaxi162Scf00013g01026 Petunia axillaris HOM05D000141 ORTHO05D001860 4.3e-11 71.6 74 50.0
TAR629G2026 Trochodendron aralioides HOM05D000141 ORTHO05D001860 4.3e-11 71.6 89 47.2
Sopen06g026410 Solanum pennellii HOM05D000141 ORTHO05D001860 9.6e-11 70.5 87 46.0
Sopen12g018330 Solanum pennellii HOM05D000141 ORTHO05D001860 9.6e-11 70.5 89 44.9
FAN04G0301 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.6e-10 69.7 92 38.0
Peaxi162Scf00634g00028 Petunia axillaris HOM05D000141 ORTHO05D001860 1.6e-10 69.7 77 46.8
CAN.G423.9 Capsicum annuum HOM05D000141 ORTHO05D001860 2.1e-10 69.3 89 43.8
Cc04_g07120 Coffea canephora HOM05D000141 ORTHO05D001860 2.8e-10 68.9 70 50.0
CiPaw.16G086000 Carya illinoinensis HOM05D000141 ORTHO05D001860 3.6e-10 68.6 68 52.9
Nn1g09531 Nelumbo nucifera HOM05D000141 ORTHO05D001860 3.6e-10 68.6 91 41.8
FAN08G1054 Fragaria x ananassa HOM05D000141 ORTHO05D001860 4.8e-10 68.2 92 38.0
Sabra15G0074600 Salix brachista HOM05D000141 ORTHO05D001860 4.8e-10 68.2 86 39.5
Solyc06g069130.4 Solanum lycopersicum HOM05D000141 ORTHO05D001860 4.8e-10 68.2 87 44.8
Gohir.A07G172732 Gossypium hirsutum HOM05D000141 ORTHO05D001860 6.2e-10 67.8 53 54.7
Gohir.A09G047800 Gossypium hirsutum HOM05D000141 ORTHO05D001860 6.2e-10 67.8 53 54.7
HanXRQChr08g0226071 Helianthus annuus HOM05D000141 ORTHO05D001860 6.2e-10 67.8 88 46.6
Nitab4.5_0006638g0060 Nicotiana tabacum HOM05D000141 ORTHO05D001860 6.2e-10 67.8 85 45.9
RcHm_v2.0_Chr7g0197631 Rosa chinensis HOM05D000141 ORTHO05D001860 6.2e-10 67.8 63 50.8
Gorai.006G061000 Gossypium raimondii HOM05D000141 ORTHO05D001860 8.1e-10 67.4 53 54.7
Lalb_Chr16g0387821 Lupinus albus HOM05D000141 ORTHO05D013114 8.1e-10 67.4 65 50.8
Thhalv10027635m.g Eutrema salsugineum HOM05D000141 ORTHO05D001860 1.1e-09 67.0 83 41.0
FAN13G3278 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.1e-09 67.0 81 42.0
Sc01g0009580 Simmondsia chinensis HOM05D000141 ORTHO05D001860 1.1e-09 67.0 66 43.9
Sc04g0003520 Simmondsia chinensis HOM05D000141 ORTHO05D001860 1.1e-09 67.0 71 42.3
SGA_v2.0_scaffold42G16030 Striga asiatica HOM05D000141 ORTHO05D001860 1.1e-09 67.0 71 47.9
Atru.chr9.840 Acer truncatum HOM05D000141 ORTHO05D001860 1.4e-09 66.6 83 39.8
FvH4_5g02480 Fragaria vesca HOM05D000141 ORTHO05D001860 1.4e-09 66.6 78 44.9
FAN18G1325 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.4e-09 66.6 78 44.9
QL12p032934 Quercus lobata HOM05D000141 ORTHO05D001860 1.4e-09 66.6 80 46.2
Sp7g00640 Schrenkiella parvula HOM05D000141 ORTHO05D001860 1.8e-09 66.2 78 44.9
SpUn0010_0120 Schrenkiella parvula HOM05D000141 ORTHO05D001860 1.8e-09 66.2 78 44.9
GSVIVG01019753001 Vitis vinifera HOM05D000141 ORTHO05D001860 1.8e-09 66.2 85 43.5
arahy.Tifrunner.gnm1.ann1.75ML24 Arachis hypogaea HOM05D000141 ORTHO05D001860 3.1e-09 65.5 93 43.0
arahy.Tifrunner.gnm1.ann1.ZRIJ0L Arachis hypogaea HOM05D000141 ORTHO05D001860 3.1e-09 65.5 93 43.0
Ciclev10018623m.g Citrus clementina HOM05D000141 ORTHO05D001860 3.1e-09 65.5 53 54.7
Duzib205G0527 Durio zibethinus HOM05D000141 ORTHO05D001860 3.1e-09 65.5 56 55.4
Prupe.5G100400 Prunus persica HOM05D000141 ORTHO05D001860 3.1e-09 65.5 109 38.5
ATR0705G190 Amborella trichopoda HOM05D000141 ORTHO05D013114 4.0e-09 65.1 66 50.0
PGR083G2430 Punica granatum HOM05D000141 ORTHO05D001860 4.0e-09 65.1 90 42.2
AUR62017198 Chenopodium quinoa HOM05D000141 ORTHO05D001860 5.3e-09 64.7 85 41.2
Medtr8g104200 Medicago truncatula HOM05D000141 ORTHO05D001860 5.3e-09 64.7 68 47.1
Cfa012227 Carpinus fangiana HOM05D000141 ORTHO05D001860 6.9e-09 64.3 87 43.7
CiPaw.11G135100 Carya illinoinensis HOM05D000141 ORTHO05D001860 6.9e-09 64.3 87 43.7
MD06G1083300 Malus domestica HOM05D000141 ORTHO05D001860 6.9e-09 64.3 99 38.4
Duzib084G0842 Durio zibethinus HOM05D000141 ORTHO05D001860 9.0e-09 63.9 56 51.8
Gohir.D03G151400 Gossypium hirsutum HOM05D000141 ORTHO05D001860 9.0e-09 63.9 56 51.8
Psat7g012000 Pisum sativum HOM05D000141 ORTHO05D001860 9.0e-09 63.9 58 53.4
Ah.12g056890 Amaranthus hybridus HOM05D000141 ORTHO05D001860 1.2e-08 63.5 93 44.1
Lj5C148T5 Lonicera japonica HOM05D000141 ORTHO05D001860 1.2e-08 63.5 83 39.8
arahy.Tifrunner.gnm1.ann1.Z2QY1L Arachis hypogaea HOM05D000141 ORTHO05D001860 1.5e-08 63.2 64 46.9
CiPaw.12G093000 Carya illinoinensis HOM05D000141 ORTHO05D001860 1.5e-08 63.2 81 46.9
Gorai.008G247000 Gossypium raimondii HOM05D000141 ORTHO05D001860 1.5e-08 63.2 56 53.6
Lalb_Chr24g0397771 Lupinus albus HOM05D000141 ORTHO05D001860 1.5e-08 63.2 59 49.2
Manes.01G011700 Manihot esculenta HOM05D000141 ORTHO05D001860 1.5e-08 63.2 91 35.2
PSO478G1443 Papaver somniferum HOM05D000141 ORTHO05D001860 1.5e-08 63.2 74 48.6
Potri.012G056700 Populus trichocarpa HOM05D000141 ORTHO05D001860 1.5e-08 63.2 86 38.4
AUR62010684 Chenopodium quinoa HOM05D000141 ORTHO05D001860 2.0e-08 62.8 66 48.5
COL.COLO4_34467 Corchorus olitorius HOM05D000141 ORTHO05D001860 2.6e-08 62.4 56 53.6
Gohir.D12G230801 Gossypium hirsutum HOM05D000141 ORTHO05D001860 2.6e-08 62.4 54 55.6
MD14G1105100 Malus domestica HOM05D000141 ORTHO05D001860 2.6e-08 62.4 99 38.4
PSO782G3574 Papaver somniferum HOM05D000141 ORTHO05D001860 2.6e-08 62.4 70 48.6
arahy.Tifrunner.gnm1.ann1.5IN5H0 Arachis hypogaea HOM05D000141 ORTHO05D001860 3.4e-08 62.0 65 46.2
arahy.Tifrunner.gnm1.ann1.U041LV Arachis hypogaea HOM05D000141 ORTHO05D001860 3.4e-08 62.0 65 46.2
Haze_08780 Corylus avellana HOM05D000141 ORTHO05D001860 3.4e-08 62.0 69 47.8
Thecc.03G278900 Theobroma cacao HOM05D000141 ORTHO05D001860 3.4e-08 62.0 52 53.8
TPR.G32706 Trifolium pratense HOM05D000141 ORTHO05D001860 3.4e-08 62.0 65 44.6
Ah.02g116660 Amaranthus hybridus HOM05D000141 ORTHO05D001860 4.5e-08 61.6 97 39.2
AUR62029862 Chenopodium quinoa HOM05D000141 ORTHO05D001860 4.5e-08 61.6 70 41.4
ClCG01G002680 Citrullus lanatus HOM05D000141 ORTHO05D001860 4.5e-08 61.6 52 57.7
DCAR_023205 Daucus carota HOM05D000141 ORTHO05D001860 4.5e-08 61.6 50 54.0
Gohir.A03G016500 Gossypium hirsutum HOM05D000141 ORTHO05D001860 4.5e-08 61.6 56 50.0
TPR.G12908 Trifolium pratense HOM05D000141 ORTHO05D013114 4.5e-08 61.6 53 49.1
Rhsim08G0134600 Rhododendron simsii HOM05D000141 ORTHO05D001860 5.8e-08 61.2 50 54.0
Zm00001eb293720 Zea mays HOM05D000141 ORTHO05D001860 5.8e-08 61.2 56 48.2
Aqoxy7G00325 Aquilegia oxysepala HOM05D000141 ORTHO05D001860 7.6e-08 60.8 80 43.8
CANSAT21G0110 Cannabis sativa HOM05D000141 ORTHO05D001860 7.6e-08 60.8 56 50.0
CANSAT21G1366 Cannabis sativa HOM05D000141 ORTHO05D001860 7.6e-08 60.8 56 50.0
Lsat_1_v5_gn_8_147020 Lactuca sativa HOM05D000141 ORTHO05D001860 7.6e-08 60.8 41 65.9
SHI26929 Sapria himalayana HOM05D000141 ORTHO05D013114 7.6e-08 60.8 59 47.5
THA.LOC104809394 Tarenaya hassleriana HOM05D000141 ORTHO05D001860 7.6e-08 60.8 45 64.4
THA.LOC104823585 Tarenaya hassleriana HOM05D000141 ORTHO05D001860 7.6e-08 60.8 45 62.2
Glyma.05G233900 Glycine max HOM05D000141 ORTHO05D001860 9.9e-08 60.5 95 36.8
Hund11467 Selenicereus undatus HOM05D000141 ORTHO05D001860 9.9e-08 60.5 44 63.6
Aa31LG9G630 Aethionema arabicum HOM05D000141 ORTHO05D001860 1.3e-07 60.1 45 62.2
AT5G41310 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 1.3e-07 60.1 45 62.2
arahy.Tifrunner.gnm1.ann1.LDZ3RE Arachis hypogaea HOM05D000141 ORTHO05D001860 1.3e-07 60.1 63 46.0
VMungo0251G0923 Vigna mungo HOM05D000141 ORTHO05D001860 1.3e-07 60.1 65 44.6
AL7G48150 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 1.7e-07 59.7 45 62.2
AUR62025894 Chenopodium quinoa HOM05D000141 ORTHO05D001860 1.7e-07 59.7 70 41.4
Sabra03G0091000 Salix brachista HOM05D000141 ORTHO05D001860 1.7e-07 59.7 63 46.0
Atru.chr9.2188 Acer truncatum HOM05D000141 ORTHO05D013114 2.2e-07 59.3 63 42.9
Carub.0007s3419 Capsella rubella HOM05D000141 ORTHO05D001860 2.2e-07 59.3 45 62.2
Ca_17531_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001860 2.2e-07 59.3 61 44.3
DCAR_011354 Daucus carota HOM05D000141 ORTHO05D001860 2.2e-07 59.3 51 45.1
Gorai.003G158800 Gossypium raimondii HOM05D000141 ORTHO05D001860 2.2e-07 59.3 49 53.1
Medtr8g098230 Medicago truncatula HOM05D000141 ORTHO05D001860 2.2e-07 59.3 55 47.3
Zm00001eb353510 Zea mays HOM05D000141 ORTHO05D001860 2.2e-07 59.3 63 47.6
Manes.02G021900 Manihot esculenta HOM05D000141 ORTHO05D001860 2.9e-07 58.9 46 56.5
Sabra12G0040200 Salix brachista HOM05D000141 ORTHO05D001860 2.9e-07 58.9 86 33.7
A04p14420 Brassica napus HOM05D000141 ORTHO05D001860 3.8e-07 58.5 78 42.3
Ca_25448_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001860 3.8e-07 58.5 65 44.6
Lj4g0002174 Lotus japonicus HOM05D000141 ORTHO05D001860 3.8e-07 58.5 65 46.2
Sed0006706 Sechium edule HOM05D000141 ORTHO05D001860 3.8e-07 58.5 52 53.8
Lalb_Chr05g0224741 Lupinus albus HOM05D000141 ORTHO05D001860 4.9e-07 58.2 54 48.1
BcaC02g08971 Brassica carinata HOM05D000141 ORTHO05D001860 6.4e-07 57.8 78 42.3
C04p48330 Brassica napus HOM05D000141 ORTHO05D001860 6.4e-07 57.8 78 42.3
BraA04t17089Z Brassica rapa HOM05D000141 ORTHO05D001860 6.4e-07 57.8 45 60.0
CDE06G1228 Ceratophyllum demersum HOM05D000141 ORTHO05D013114 6.4e-07 57.8 45 57.8
Potri.003G127800 Populus trichocarpa HOM05D000141 ORTHO05D001860 6.4e-07 57.8 63 44.4
Hund10244 Selenicereus undatus HOM05D000141 ORTHO05D013114 6.4e-07 57.8 64 40.6
BcaB06g27610 Brassica carinata HOM05D000141 ORTHO05D001860 1.1e-06 57.0 78 41.0
BolC4t26426H Brassica oleracea HOM05D000141 ORTHO05D001860 1.1e-06 57.0 45 60.0
MBI04_g06594_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001860 1.1e-06 57.0 50 52.0
BcaC04g22695 Brassica carinata HOM05D000141 ORTHO05D001860 1.4e-06 56.6 45 57.8
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 1.4e-06 56.6 45 57.8
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 1.4e-06 56.6 45 57.8
BolC9t54556H Brassica oleracea HOM05D000141 ORTHO05D001860 1.4e-06 56.6 45 57.8
BraA09t37030Z Brassica rapa HOM05D000141 ORTHO05D001860 1.4e-06 56.6 45 57.8
BolC9t54765H Brassica oleracea HOM05D000141 ORTHO05D001860 1.9e-06 56.2 71 45.1
Thhalv10027628m.g Eutrema salsugineum HOM05D000141 ORTHO05D001860 1.9e-06 56.2 45 60.0
Sp2g01030 Schrenkiella parvula HOM05D000141 ORTHO05D001860 1.9e-06 56.2 45 60.0
GSVIVG01008287001 Vitis vinifera HOM05D000141 ORTHO05D001860 1.9e-06 56.2 41 63.4
C09p18680 Brassica napus HOM05D000141 ORTHO05D001860 2.4e-06 55.8 55 50.9
Manes.01G060600 Manihot esculenta HOM05D000141 ORTHO05D001860 2.4e-06 55.8 42 57.1
Potri.001G104000 Populus trichocarpa HOM05D000141 ORTHO05D001860 2.4e-06 55.8 90 37.8
AL2G11590 Arabidopsis lyrata HOM05D000141 ORTHO05D013114 3.2e-06 55.5 45 60.0
AL2G11600 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 3.2e-06 55.5 45 60.0
AT1G63640 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 3.2e-06 55.5 45 60.0
BcaB07g31560 Brassica carinata HOM05D000141 ORTHO05D001860 3.2e-06 55.5 45 57.8
Carub.0002s0122 Capsella rubella HOM05D000141 ORTHO05D001860 3.2e-06 55.5 45 60.0
CARHR047700 Cardamine hirsuta HOM05D000141 ORTHO05D001860 3.2e-06 55.5 45 60.0
Sed0014958 Sechium edule HOM05D000141 ORTHO05D001860 3.2e-06 55.5 45 57.8
BcaB07g31406 Brassica carinata HOM05D000141 ORTHO05D001860 4.2e-06 55.1 45 60.0
Sabra01G0078500 Salix brachista HOM05D000141 ORTHO05D001860 4.2e-06 55.1 90 37.8
TWI60G1186 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 4.2e-06 55.1 54 48.1
A09p15410 Brassica napus HOM05D000141 ORTHO05D001860 5.5e-06 54.7 76 47.4
BraA09t37183Z Brassica rapa HOM05D000141 ORTHO05D001860 5.5e-06 54.7 76 47.4
Os05g0521300 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D001860 5.5e-06 54.7 49 49.0
EL10Ac5g13063 Beta vulgaris HOM05D000141 ORTHO05D001860 7.1e-06 54.3 90 36.7


User provided reference genes

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