Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 3.4e-98 361.7 185 100.0
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.6e-76 289.7 195 82.1
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 4.8e-76 288.1 195 82.1
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 4.0e-75 285.0 195 81.5
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 8.1e-68 260.8 190 77.9
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 1.4e-67 260.0 192 74.5
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 1.5e-66 256.5 192 74.0
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 9.3e-64 247.3 192 70.3
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 3.5e-63 245.4 192 69.8
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 2.3e-62 242.7 192 68.8
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 6.7e-62 241.1 193 68.9
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 8.7e-62 240.7 193 69.4
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 8.7e-62 240.7 190 68.4
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 2.5e-61 239.2 192 66.7
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 5.6e-61 238.0 186 69.9
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 7.4e-61 237.7 193 66.8
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 2.8e-60 235.7 187 69.0
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 2.4e-59 232.6 193 65.8
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 3.1e-59 232.3 184 65.8
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 5.3e-59 231.5 175 68.0
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 6.9e-59 231.1 195 67.2
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 1.0e-57 227.3 176 65.9
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 1.3e-57 226.9 187 63.6
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 1.7e-57 226.5 211 62.1
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 2.9e-57 225.7 178 64.6
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 2.9e-57 225.7 178 64.6
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 6.5e-57 224.6 196 61.7
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 1.4e-56 223.4 174 67.2
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 2.5e-56 222.6 174 66.1
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 2.5e-56 222.6 175 65.7
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 2.5e-56 222.6 188 65.4
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 2.5e-56 222.6 192 62.5
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 4.2e-56 221.9 177 68.9
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 5.5e-56 221.5 171 66.7
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 5.5e-56 221.5 187 64.7
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 7.1e-56 221.1 200 60.5
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 7.1e-56 221.1 177 63.3
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 7.1e-56 221.1 175 67.4
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 1.2e-55 220.3 174 68.4
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 1.6e-55 219.9 175 64.6
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 1.6e-55 219.9 179 68.2
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 2.1e-55 219.5 174 65.5
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 2.1e-55 219.5 172 65.1
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 3.5e-55 218.8 173 66.5
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 3.5e-55 218.8 183 67.2
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 3.5e-55 218.8 193 62.7
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 3.5e-55 218.8 171 65.5
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 4.6e-55 218.4 174 66.1
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 1.3e-54 216.9 185 63.8
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 1.8e-54 216.5 169 66.3
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 2.3e-54 216.1 183 62.8
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 5.1e-54 214.9 172 65.1
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 5.1e-54 214.9 187 61.5
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 8.7e-54 214.2 170 64.7
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 1.1e-53 213.8 177 63.8
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 1.1e-53 213.8 170 67.6
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 1.9e-53 213.0 163 69.9
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 2.5e-53 212.6 178 64.6
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 2.5e-53 212.6 183 66.7
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 3.3e-53 212.2 188 60.1
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 4.3e-53 211.8 182 62.1
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 4.3e-53 211.8 189 59.8
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 5.7e-53 211.5 191 59.7
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 5.7e-53 211.5 185 65.4
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 2.1e-52 209.5 188 62.8
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 2.8e-52 209.1 191 59.2
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 2.8e-52 209.1 185 61.1
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 3.7e-52 208.8 205 61.0
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 6.3e-52 208.0 170 64.7
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 1.4e-51 206.8 167 65.3
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 1.8e-51 206.5 191 59.2
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 2.4e-51 206.1 168 65.5
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 4.1e-51 205.3 183 61.7
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 4.1e-51 205.3 181 61.3
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 4.1e-51 205.3 173 65.3
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 6.9e-51 204.5 186 59.1
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 4.5e-50 201.8 176 65.9
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 4.5e-50 201.8 173 63.0
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 5.9e-50 201.4 173 63.6
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 3.8e-49 198.7 169 63.3
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 6.5e-49 198.0 169 60.4
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 2.5e-48 196.1 176 61.9
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 4.2e-48 195.3 186 57.0
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 4.2e-48 195.3 173 58.4
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 1.6e-47 193.4 166 62.7
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 2.7e-47 192.6 147 66.7
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 2.7e-47 192.6 178 59.0
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 4.6e-47 191.8 167 62.9
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 1.8e-46 189.9 189 58.7
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 5.1e-46 188.3 181 58.6
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 5.1e-46 188.3 164 62.8
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 5.1e-46 188.3 229 50.2
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 2.2e-44 183.0 162 61.1
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 2.8e-44 182.6 162 60.5
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 3.7e-44 182.2 108 79.6
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.8e-43 179.9 91 95.6
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 2.4e-43 179.5 114 76.3
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 9.1e-43 177.6 173 58.4
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.5e-42 176.8 91 94.5
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 2.0e-42 176.4 109 76.1
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 2.0e-42 176.4 108 76.9
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 2.6e-42 176.0 109 75.2
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 4.5e-42 175.3 154 61.7
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 1.3e-41 173.7 109 76.1
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 2.9e-41 172.6 142 63.4
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 1.9e-40 169.9 108 73.1
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.9e-40 169.9 186 53.2
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 1.2e-39 167.2 111 73.0
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 3.0e-38 162.5 152 61.8
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 8.8e-38 161.0 138 59.4
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 1.5e-34 150.2 124 59.7
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 2.6e-34 149.4 134 64.2
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 3.4e-34 149.1 91 79.1
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 6.5e-33 144.8 98 75.5
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.4e-32 143.7 88 75.0
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 2.7e-31 139.4 107 63.6
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 1.8e-30 136.7 101 63.4
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.3e-28 130.6 100 60.0
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 8.2e-28 127.9 97 62.9
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 2.4e-27 126.3 144 54.2
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 2.2e-25 119.8 90 62.2
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 2.9e-25 119.4 94 58.5
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 8.5e-25 117.9 70 75.7
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 8.0e-23 111.3 81 67.9
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 5.2e-22 108.6 103 54.4
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 8.8e-22 107.8 70 67.1
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 1.3e-20 104.0 92 57.6
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 5.9e-10 68.6 93 35.5


User provided reference genes

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