Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0237351 Rosa chinensis HOM05D007660 ORTHO05D009442 2.8e-85 318.5 157 100.0
RcHm_v2.0_Chr4g0424581 Rosa chinensis HOM05D007660 ORTHO05D009442 1.3e-66 256.5 131 93.1
FAN08G3071 Fragaria x ananassa HOM05D007660 ORTHO05D009442 3.5e-64 248.4 138 88.4
FAN18G0914 Fragaria x ananassa HOM05D007660 ORTHO05D009442 3.5e-64 248.4 138 89.1
FAN04G1497 Fragaria x ananassa HOM05D007660 ORTHO05D009442 6.0e-64 247.7 138 88.4
FAN13G3224 Fragaria x ananassa HOM05D007660 ORTHO05D009442 1.8e-63 246.1 138 87.7
Prupe.1G528200 Prunus persica HOM05D007660 ORTHO05D009442 2.2e-50 202.6 131 72.5
CSS0016503 Camellia sinensis var. sinensis HOM05D007660 ORTHO05D009442 2.2e-42 176.0 120 68.3
Actinidia30813 Actinidia chinensis HOM05D007660 ORTHO05D009442 8.5e-42 174.1 120 69.2
Cfa013697 Carpinus fangiana HOM05D007660 ORTHO05D009442 2.5e-41 172.6 139 66.2
Duzib168G2083 Durio zibethinus HOM05D007660 ORTHO05D009442 7.2e-41 171.0 131 68.7
CiPaw.07G167700 Carya illinoinensis HOM05D007660 ORTHO05D009442 4.7e-40 168.3 139 64.7
Lj4g0004817 Lotus japonicus HOM05D007660 ORTHO05D009442 1.4e-39 166.8 113 71.7
Atru.chr13.1043 Acer truncatum HOM05D007660 ORTHO05D009442 3.9e-39 165.2 132 65.9
Haze_22339 Corylus avellana HOM05D007660 ORTHO05D009442 1.1e-38 163.7 127 68.5
Dinv42632 Davidia involucrata HOM05D007660 ORTHO05D009442 2.0e-38 162.9 137 62.0
Manes.03G106200 Manihot esculenta HOM05D007660 ORTHO05D009442 2.6e-38 162.5 120 65.8
Rhsim06G0073800 Rhododendron simsii HOM05D007660 ORTHO05D009442 5.7e-38 161.4 110 71.8
QL09p017232 Quercus lobata HOM05D007660 ORTHO05D009442 1.7e-37 159.8 132 62.1
COL.COLO4_24918 Corchorus olitorius HOM05D007660 ORTHO05D009442 2.8e-37 159.1 131 61.8
Thecc.09G257500 Theobroma cacao HOM05D007660 ORTHO05D009442 3.7e-37 158.7 131 63.4
Gorai.001G131400 Gossypium raimondii HOM05D007660 ORTHO05D009442 8.2e-37 157.5 131 61.8
Ca_15991_v3 Cicer arietinum L. HOM05D001657 ORTHO05D001557 1.4e-36 156.8 116 68.1
Medtr3g100600 Medicago truncatula HOM05D007660 ORTHO05D009442 4.1e-36 155.2 110 70.9
TPR.G26074 Trifolium pratense HOM05D007660 ORTHO05D009442 5.3e-36 154.8 121 65.3
CANSAT80G0706 Cannabis sativa HOM05D007660 ORTHO05D009442 9.1e-36 154.1 132 62.9
TWI56G0560 Tripterygium wilfordii HOM05D007660 ORTHO05D009442 3.5e-35 152.1 135 61.5
Psat5g045960 Pisum sativum HOM05D007660 ORTHO05D009442 5.9e-35 151.4 131 60.3
Ciclev10000867m.g Citrus clementina HOM05D007660 ORTHO05D009442 1.0e-34 150.6 131 62.6
Nn5g29930 Nelumbo nucifera HOM05D007660 ORTHO05D009442 2.2e-34 149.4 133 57.1
Sc23g0000600 Simmondsia chinensis HOM05D007660 ORTHO05D009442 6.5e-34 147.9 120 64.2
Lalb_Chr23g0270081 Lupinus albus HOM05D007660 ORTHO05D009442 2.5e-33 146.0 116 65.5
THA.LOC104806823 Tarenaya hassleriana HOM05D007660 ORTHO05D009442 4.2e-33 145.2 113 61.9
Phvul.009G143500 Phaseolus vulgaris HOM05D007660 ORTHO05D009442 5.5e-33 144.8 110 66.4
Lj3P942T62 Lonicera japonica HOM05D007660 ORTHO05D009442 9.4e-33 144.1 110 64.5
PGR042G3094 Punica granatum HOM05D007660 ORTHO05D009442 9.4e-33 144.1 131 57.3
TAR376G0278 Trochodendron aralioides HOM05D007660 ORTHO05D009442 1.6e-32 143.3 133 54.9
VMungo1309G0569 Vigna mungo HOM05D007660 ORTHO05D009442 2.7e-32 142.5 113 62.8
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 1.4e-31 140.2 109 66.1
CARHR194540 Cardamine hirsuta HOM05D007660 ORTHO05D009442 5.2e-31 138.3 110 60.0
PGSC0003DMG400012911 Solanum tuberosum HOM05D007660 ORTHO05D009442 2.0e-30 136.3 116 56.9
Cc10_g15650 Coffea canephora HOM05D007660 ORTHO05D009442 5.7e-30 134.8 120 54.2
Sopen00g006420 Solanum pennellii HOM05D007660 ORTHO05D009442 5.7e-30 134.8 116 56.0
Sopen00g004320 Solanum pennellii HOM05D007660 ORTHO05D009442 7.5e-30 134.4 116 56.0
AUR62020133 Chenopodium quinoa HOM05D007660 ORTHO05D009442 1.3e-29 133.7 111 62.2
BcaB05g23329 Brassica carinata HOM05D007660 ORTHO05D009442 2.8e-29 132.5 110 56.4
AUR62001643 Chenopodium quinoa HOM05D007660 ORTHO05D009442 2.8e-29 132.5 111 62.2
AL6G29730 Arabidopsis lyrata HOM05D007660 ORTHO05D009442 3.7e-29 132.1 110 55.5
Cpa.g.sc309.5 Carica papaya HOM05D007660 ORTHO05D009442 3.7e-29 132.1 92 65.2
Solyc04g076070.1 Solanum lycopersicum HOM05D007660 ORTHO05D009442 3.7e-29 132.1 116 55.2
SalBow3G4457 Salvia bowleyana HOM05D007660 ORTHO05D009442 6.3e-29 131.3 110 57.3
PSO675G1649 Papaver somniferum HOM05D007660 ORTHO05D009442 1.1e-28 130.6 136 51.5
Sp6g25850 Schrenkiella parvula HOM05D007660 ORTHO05D009442 1.1e-28 130.6 110 55.5
EL10Ac7g16170 Beta vulgaris HOM05D007660 ORTHO05D009442 1.8e-28 129.8 120 55.8
CAN.G1375.15 Capsicum annuum HOM05D007660 ORTHO05D009442 1.8e-28 129.8 117 56.4
ClCG11G014470 Citrullus lanatus HOM05D007660 ORTHO05D009442 2.4e-28 129.4 85 71.8
AT5G18475 Arabidopsis thaliana HOM05D007660 ORTHO05D009442 3.1e-28 129.0 110 55.5
Thhalv10010303m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 3.1e-28 129.0 110 55.5
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 3.1e-28 129.0 109 61.5
Lsat_1_v5_gn_9_75000 Lactuca sativa HOM05D007660 ORTHO05D009442 4.1e-28 128.6 120 52.5
Nitab4.5_0001507g0030 Nicotiana tabacum HOM05D007660 ORTHO05D009442 4.1e-28 128.6 117 56.4
Aqoxy6G01459 Aquilegia oxysepala HOM05D007660 ORTHO05D009442 5.3e-28 128.3 110 57.3
Nitab4.5_0013728g0010 Nicotiana tabacum HOM05D007660 ORTHO05D009442 7.0e-28 127.9 117 56.4
BcaC03g13602 Brassica carinata HOM05D007660 ORTHO05D009442 9.1e-28 127.5 110 56.4
C02p09910 Brassica napus HOM05D007660 ORTHO05D009442 9.1e-28 127.5 110 56.4
BolC2t06898H Brassica oleracea HOM05D007660 ORTHO05D009442 9.1e-28 127.5 110 56.4
A02p04930 Brassica napus HOM05D007660 ORTHO05D009442 1.2e-27 127.1 110 55.5
PSO541G1025 Papaver somniferum HOM05D007660 ORTHO05D009442 1.2e-27 127.1 110 55.5
MSTRG.2718 Avicennia marina HOM05D007660 ORTHO05D009442 1.6e-27 126.7 115 54.8
Sed0003873 Sechium edule HOM05D007660 ORTHO05D009442 2.7e-27 125.9 116 55.2
ECA232G0036 Erigeron canadensis HOM05D007660 ORTHO05D009442 3.5e-27 125.6 116 55.2
BraA02t05452Z Brassica rapa HOM05D007660 ORTHO05D009442 7.7e-27 124.4 110 54.5
CsaV3_3G047880 Cucumis sativus L. HOM05D007660 ORTHO05D009442 4.2e-25 118.6 108 54.6
Migut.B01252 Erythranthe guttata HOM05D007660 ORTHO05D009442 5.5e-25 118.2 115 52.2
Peaxi162Scf00281g00043 Petunia axillaris HOM05D007660 ORTHO05D009442 2.1e-24 116.3 116 53.4
SGA_v2.0_scaffold126G33870 Striga asiatica HOM05D007660 ORTHO05D009442 6.1e-24 114.8 84 60.7
HanXRQChr09g0250871 Helianthus annuus HOM05D007660 ORTHO05D009442 1.4e-23 113.6 141 44.7
Aa31LG11G11130 Aethionema arabicum HOM05D007660 ORTHO05D009442 1.5e-22 110.2 111 53.2
SHI48801 Sapria himalayana HOM05D007660 ORTHO05D009442 3.7e-21 105.5 88 54.5
SHI48939 Sapria himalayana HOM05D007660 ORTHO05D009442 3.7e-21 105.5 88 54.5
ATR0022G052 Amborella trichopoda HOM05D007660 ORTHO05D009442 7.0e-20 101.3 110 46.4
Eucgr.A00716 Eucalyptus grandis HOM05D007660 ORTHO05D009442 2.9e-18 95.9 60 73.3
SEGI_34607 Sequoiadendron giganteum HOM05D007660 ORTHO05D009442 2.1e-16 89.7 124 41.1
Dinv44841 Davidia involucrata HOM05D007660 ORTHO05D009442 1.7e-13 80.1 47 74.5
Thhalv10001862m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 2.8e-13 79.3 61 62.3
Carub.0002s2137 Capsella rubella HOM05D002453 ORTHO05D002107 1.2e-06 57.4 61 41.0
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 1.5e-06 57.0 61 42.6
SEGI_15100 Sequoiadendron giganteum HOM05D002453 ORTHO05D002107 2.6e-06 56.2 73 34.2
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 3.4e-06 55.8 61 44.3
AUR62008396 Chenopodium quinoa HOM05D002453 ORTHO05D002107 4.4e-06 55.5 63 44.4
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 4.4e-06 55.5 63 44.4
Cc05_g10440 Coffea canephora HOM05D007085 ORTHO05D008828 5.8e-06 55.1 112 29.5
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 5.8e-06 55.1 72 44.4
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 7.5e-06 54.7 57 40.4
Os02g0468500 Oryza sativa ssp. japonica HOM05D007660 ORTHO05D009442 7.5e-06 54.7 116 30.2
SEGI_32765 Sequoiadendron giganteum HOM05D002737 ORTHO05D009499 7.5e-06 54.7 65 41.5
SEGI_16355 Sequoiadendron giganteum HOM05D004271 ORTHO05D006011 9.8e-06 54.3 69 34.8


User provided reference genes

Program Settings