Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0237281 Rosa chinensis HOM05D001083 ORTHO05D043890 1.5e-62 242.7 120 100.0
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 8.5e-50 200.3 99 100.0
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 8.5e-50 200.3 99 100.0
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 4.2e-49 198.0 98 100.0
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 2.1e-48 195.7 98 98.0
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 2.1e-48 195.7 98 99.0
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 4.6e-48 194.5 98 98.0
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.9e-48 193.7 98 98.0
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 7.9e-48 193.7 98 98.0
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 1.0e-47 193.4 98 98.0
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 1.8e-47 192.6 98 96.9
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 3.0e-47 191.8 98 96.9
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 3.9e-47 191.4 98 96.9
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 5.1e-47 191.0 98 96.9
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 6.7e-47 190.7 98 95.9
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 6.7e-47 190.7 98 95.9
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 6.7e-47 190.7 98 95.9
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 6.7e-47 190.7 98 95.9
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 8.8e-47 190.3 98 95.9
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 1.1e-46 189.9 98 94.9
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 1.1e-46 189.9 98 94.9
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.5e-46 189.5 98 94.9
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.5e-46 189.5 98 94.9
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 2.0e-46 189.1 119 79.8
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 2.0e-46 189.1 98 94.9
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 2.0e-46 189.1 98 94.9
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 2.0e-46 189.1 98 94.9
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 2.5e-46 188.7 98 94.9
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 2.5e-46 188.7 98 95.9
Sopen00g007090 Solanum pennellii HOM05D001083 ORTHO05D006562 2.5e-46 188.7 98 95.9
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 4.3e-46 188.0 98 93.9
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 4.3e-46 188.0 98 93.9
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 4.3e-46 188.0 98 94.9
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 5.7e-46 187.6 98 93.9
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 5.7e-46 187.6 98 94.9
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 5.7e-46 187.6 98 93.9
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 7.4e-46 187.2 98 93.9
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 7.4e-46 187.2 97 94.8
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 7.4e-46 187.2 98 93.9
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 7.4e-46 187.2 98 93.9
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 9.7e-46 186.8 98 93.9
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 1.3e-45 186.4 98 93.9
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 1.3e-45 186.4 98 92.9
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 1.3e-45 186.4 98 93.9
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 1.3e-45 186.4 98 93.9
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 1.7e-45 186.0 98 93.9
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 1.7e-45 186.0 98 93.9
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 1.7e-45 186.0 98 93.9
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 1.7e-45 186.0 98 94.9
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 1.7e-45 186.0 98 93.9
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 1.7e-45 186.0 98 92.9
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 2.2e-45 185.7 98 92.9
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 2.2e-45 185.7 98 93.9
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 2.2e-45 185.7 98 93.9
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 2.2e-45 185.7 98 93.9
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 2.2e-45 185.7 98 93.9
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 2.8e-45 185.3 98 93.9
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 2.8e-45 185.3 97 92.8
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 2.8e-45 185.3 98 91.8
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 2.8e-45 185.3 98 92.9
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 2.8e-45 185.3 98 92.9
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 3.7e-45 184.9 98 92.9
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 3.7e-45 184.9 98 91.8
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 3.7e-45 184.9 98 92.9
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 4.8e-45 184.5 98 92.9
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 4.8e-45 184.5 97 92.8
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 4.8e-45 184.5 98 91.8
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 4.8e-45 184.5 98 90.8
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 6.3e-45 184.1 97 92.8
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 6.3e-45 184.1 97 92.8
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 6.3e-45 184.1 98 92.9
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 6.3e-45 184.1 98 92.9
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 8.2e-45 183.7 97 91.8
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.1e-44 183.3 98 92.9
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 1.1e-44 183.3 98 92.9
Duzib116G0753 Durio zibethinus HOM05D001083 ORTHO05D006562 1.1e-44 183.3 98 90.8
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 1.1e-44 183.3 98 92.9
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 1.4e-44 183.0 98 92.9
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 1.4e-44 183.0 97 91.8
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 1.4e-44 183.0 97 91.8
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 1.4e-44 183.0 97 91.8
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.4e-44 183.0 98 89.8
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 1.4e-44 183.0 98 91.8
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.4e-44 183.0 98 91.8
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 1.8e-44 182.6 97 91.8
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 1.8e-44 182.6 97 91.8
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 1.8e-44 182.6 97 91.8
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.8e-44 182.6 98 89.8
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.8e-44 182.6 98 89.8
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 1.8e-44 182.6 98 91.8
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 2.4e-44 182.2 98 91.8
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 2.4e-44 182.2 98 91.8
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 2.4e-44 182.2 98 91.8
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 3.1e-44 181.8 97 90.7
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 3.1e-44 181.8 98 90.8
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 3.1e-44 181.8 98 90.8
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 3.1e-44 181.8 98 90.8
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 3.1e-44 181.8 98 91.8
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 3.1e-44 181.8 97 91.8
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 5.3e-44 181.0 98 91.8
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 5.3e-44 181.0 98 89.8
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 5.3e-44 181.0 98 90.8
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 6.9e-44 180.6 97 90.7
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 6.9e-44 180.6 97 90.7
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 6.9e-44 180.6 96 91.7
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 6.9e-44 180.6 96 91.7
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 6.9e-44 180.6 98 90.8
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 9.1e-44 180.3 97 90.7
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 9.1e-44 180.3 98 90.8
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 9.1e-44 180.3 97 89.7
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 9.1e-44 180.3 98 91.8
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 9.1e-44 180.3 98 91.8
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 1.2e-43 179.9 97 90.7
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 1.2e-43 179.9 97 90.7
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 1.2e-43 179.9 97 90.7
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 1.5e-43 179.5 98 88.8
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 1.5e-43 179.5 100 89.0
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 1.5e-43 179.5 95 92.6
SGA_v2.0_scaffold48G17819 Striga asiatica HOM05D001083 ORTHO05D006562 1.5e-43 179.5 98 91.8
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 2.6e-43 178.7 98 89.8
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 2.6e-43 178.7 98 87.8
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 2.6e-43 178.7 95 90.5
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 2.6e-43 178.7 97 89.7
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 3.4e-43 178.3 98 89.8
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 4.5e-43 177.9 98 87.8
Os08g0478800 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 5.9e-43 177.6 97 89.7
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 1.3e-42 176.4 98 86.7
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 1.3e-42 176.4 97 89.7
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 1.7e-42 176.0 106 83.0
Gohir.D05G223666 Gossypium hirsutum HOM05D001083 ORTHO05D006562 3.8e-42 174.9 98 86.7
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 5.5e-41 171.0 95 87.4
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 9.4e-41 170.2 95 87.4
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 2.7e-40 168.7 98 86.7
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 7.9e-40 167.2 114 78.1
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 1.3e-37 159.8 95 82.1
SHI06379 Sapria himalayana HOM05D001083 ORTHO05D006562 8.2e-37 157.1 97 80.4
CDE10G0945 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 2.0e-35 152.5 76 97.4
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 7.2e-33 144.1 77 89.6
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 4.8e-29 131.3 70 90.0
PGSC0003DMG400009848 Solanum tuberosum HOM05D001083 ORTHO05D037767 1.0e-23 113.6 73 76.7
CAN.G175.14 Capsicum annuum HOM05D001083 ORTHO05D006562 1.5e-22 109.8 99 63.6
CDE10G0780 Ceratophyllum demersum HOM05D001083 ORTHO05D043890 6.5e-18 94.4 48 97.9
PGSC0003DMG400030128 Solanum tuberosum HOM05D001083 ORTHO05D037767 2.8e-13 79.0 47 83.0
MBI06_g36047_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D006562 4.1e-12 75.1 98 49.0


User provided reference genes

Program Settings