Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 2.7e-73 278.5 133 100.0
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 3.3e-39 165.2 95 86.3
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 5.7e-39 164.5 167 55.1
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 1.8e-37 159.5 167 53.9
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 2.4e-37 159.1 168 53.6
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 3.1e-37 158.7 168 53.0
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 1.2e-36 156.8 84 90.5
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 2.9e-35 152.1 164 53.0
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 5.5e-34 147.9 164 51.2
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 2.7e-33 145.6 165 53.3
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 6.1e-33 144.4 164 52.4
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 1.4e-32 143.3 164 49.4
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 2.3e-32 142.5 165 51.5
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 8.8e-32 140.6 164 51.2
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 1.5e-31 139.8 168 45.8
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 2.6e-31 139.0 168 48.8
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 4.4e-31 138.3 176 49.4
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 5.7e-31 137.9 166 50.6
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 7.5e-31 137.5 224 41.1
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 7.5e-31 137.5 165 52.1
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 9.7e-31 137.1 161 47.8
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 9.7e-31 137.1 169 48.5
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 1.3e-30 136.7 178 48.9
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 1.7e-30 136.3 171 48.5
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 2.8e-30 135.6 165 48.5
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 1.1e-29 133.7 159 50.3
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 1.1e-29 133.7 165 49.1
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 3.1e-29 132.1 161 48.4
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 4.1e-29 131.7 198 41.9
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 4.1e-29 131.7 171 48.5
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 5.3e-29 131.3 168 45.8
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 5.3e-29 131.3 168 45.8
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 7.0e-29 131.0 160 46.9
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 9.1e-29 130.6 127 58.3
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.2e-28 130.2 171 48.0
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 1.6e-28 129.8 124 55.6
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 2.0e-28 129.4 160 46.2
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 2.7e-28 129.0 165 47.9
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 4.5e-28 128.3 169 45.6
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 4.5e-28 128.3 170 45.9
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 1.3e-27 126.7 173 44.5
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 1.7e-27 126.3 164 47.6
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 3.8e-27 125.2 151 48.3
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 6.5e-27 124.4 119 57.1
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 6.5e-27 124.4 85 74.1
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 8.5e-27 124.0 163 47.2
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 1.9e-26 122.9 164 45.7
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 1.9e-26 122.9 164 45.7
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 1.9e-26 122.9 164 45.7
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 1.9e-26 122.9 164 45.7
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 1.9e-26 122.9 190 40.5
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 1.9e-26 122.9 170 44.7
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 5.5e-26 121.3 164 45.1
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 1.2e-25 120.2 170 44.7
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 1.2e-25 120.2 171 48.5
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 1.6e-25 119.8 164 44.5
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 2.7e-25 119.0 165 46.1
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 2.7e-25 119.0 165 44.2
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 3.6e-25 118.6 154 45.5
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 4.7e-25 118.2 164 43.9
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 8.0e-25 117.5 164 45.1
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.0e-24 117.1 166 44.6
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 1.0e-24 117.1 157 45.9
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 1.8e-24 116.3 171 42.1
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 4.0e-24 115.2 164 43.9
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 5.2e-24 114.8 116 54.3
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 5.2e-24 114.8 162 45.1
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 5.2e-24 114.8 164 44.5
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 6.8e-24 114.4 164 43.3
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 3.4e-23 112.1 162 44.4
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 7.5e-23 110.9 114 52.6
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 8.3e-22 107.5 119 51.3
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 1.4e-21 106.7 116 50.9
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 3.1e-21 105.5 116 50.9
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 4.1e-21 105.1 167 42.5
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 5.4e-21 104.8 84 65.5
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 5.4e-21 104.8 119 47.1
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 5.4e-21 104.8 142 43.7
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 5.4e-21 104.8 112 50.9
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 7.7e-20 100.9 148 41.9
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 1.9e-18 96.3 128 42.2
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 1.9e-18 96.3 121 44.6
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 1.2e-17 93.6 144 41.0
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 1.6e-17 93.2 116 45.7
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 2.1e-17 92.8 95 54.7
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 1.8e-16 89.7 162 37.0
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 1.8e-16 89.7 168 36.9
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 5.2e-16 88.2 121 41.3
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 2.0e-15 86.3 150 40.7
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 2.6e-15 85.9 87 56.3
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 3.4e-15 85.5 106 45.3
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 9.8e-15 84.0 116 39.7
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 5.4e-13 78.2 84 53.6
RcHm_v2.0_Chr5g0002331 Rosa chinensis HOM05D007052 ORTHO05D008871 3.5e-12 75.5 35 94.3
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 1.0e-11 73.9 84 51.2
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 1.0e-11 73.9 114 33.3
FAN25G3667 Fragaria x ananassa HOM05D007052 ORTHO05D008871 5.0e-11 71.6 35 91.4
Nitab4.5_0007209g0010 Nicotiana tabacum HOM05D007052 ORTHO05D008871 2.5e-10 69.3 43 69.8
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 4.3e-10 68.6 35 85.7
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 6.1e-09 64.7 50 68.0
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 3.1e-08 62.4 50 64.0
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 5.2e-08 61.6 122 32.0


User provided reference genes

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