Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 5.0e-123 444.5 233 100.0
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 1.3e-91 340.1 233 76.4
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 8.6e-91 337.4 233 77.7
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 2.7e-84 315.8 220 76.4
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 9.2e-77 290.8 233 73.0
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 3.6e-36 156.0 225 49.8
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 1.3e-30 137.5 223 41.3
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 3.8e-30 136.0 221 47.5
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 8.5e-30 134.8 224 45.5
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 4.7e-28 129.0 215 45.6
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 1.0e-27 127.9 223 43.0
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 1.1e-26 124.4 218 44.0
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 1.5e-26 124.0 118 62.7
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 4.4e-26 122.5 219 44.7
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 4.8e-25 119.0 208 38.5
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 6.3e-25 118.6 221 43.0
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 1.1e-24 117.9 214 42.5
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 1.1e-24 117.9 121 57.0
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 1.4e-24 117.5 180 47.2
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 2.4e-24 116.7 225 42.7
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 2.4e-24 116.7 219 42.5
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 3.1e-24 116.3 136 54.4
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 4.1e-24 115.9 163 44.2
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 6.9e-24 115.2 172 41.3
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 1.5e-23 114.0 171 34.5
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 3.4e-23 112.8 170 38.8
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 4.5e-23 112.5 187 33.7
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 4.5e-23 112.5 217 40.6
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 5.9e-23 112.1 168 44.6
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 7.7e-23 111.7 217 40.1
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 2.2e-22 110.2 120 59.2
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 2.2e-22 110.2 142 49.3
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 2.2e-22 110.2 150 46.7
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 2.9e-22 109.8 185 34.6
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 2.9e-22 109.8 128 51.6
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 2.9e-22 109.8 179 40.8
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 3.8e-22 109.4 213 35.2
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 5.0e-22 109.0 138 50.7
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 1.4e-21 107.5 138 44.9
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.4e-21 107.5 154 48.7
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 1.9e-21 107.1 163 47.2
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 2.5e-21 106.7 166 45.8
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 2.5e-21 106.7 166 45.8
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 2.5e-21 106.7 218 40.4
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 2.5e-21 106.7 214 37.9
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 4.2e-21 105.9 159 45.9
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 5.5e-21 105.5 160 46.2
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 1.2e-20 104.4 162 47.5
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 1.6e-20 104.0 212 36.8
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 1.6e-20 104.0 119 45.4
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 2.1e-20 103.6 137 54.0
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 2.1e-20 103.6 164 40.2
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 2.1e-20 103.6 223 37.7
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 2.1e-20 103.6 213 34.7
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 2.7e-20 103.2 161 41.0
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 4.7e-20 102.4 149 44.3
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 8.0e-20 101.7 169 35.5
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 2.3e-19 100.1 128 53.9
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 3.0e-19 99.8 121 51.2
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 1.1e-18 97.8 173 39.3
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 2.0e-18 97.1 121 49.6
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 2.0e-18 97.1 220 35.9
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 2.6e-18 96.7 196 41.8
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 4.4e-18 95.9 99 59.6
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 5.7e-18 95.5 238 37.4
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 5.7e-18 95.5 136 45.6
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 5.7e-18 95.5 170 44.7
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 1.7e-17 94.0 125 44.0
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 4.8e-17 92.4 99 56.6
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.8e-16 90.5 205 38.5
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 1.8e-16 90.5 120 46.7
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 2.4e-16 90.1 128 39.8
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 3.1e-16 89.7 209 37.8
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 1.2e-15 87.8 87 62.1
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 2.6e-15 86.7 169 32.0
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 2.6e-15 86.7 192 39.1
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 2.2e-14 83.6 220 36.8
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 2.9e-14 83.2 167 29.3
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 6.5e-14 82.0 129 40.3
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 8.5e-14 81.6 170 32.4
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 8.5e-14 81.6 170 32.4
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 1.9e-13 80.5 121 32.2
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 1.9e-13 80.5 169 33.1
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 3.2e-13 79.7 169 31.4
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 3.2e-13 79.7 171 38.6
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 8.0e-12 75.1 128 45.3
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 1.8e-11 73.9 61 60.7
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 2.3e-11 73.6 160 37.5
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 3.0e-11 73.2 110 47.3
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 4.0e-11 72.8 128 38.3
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 8.8e-11 71.6 113 45.1
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 2.0e-10 70.5 101 54.5
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 3.3e-10 69.7 135 38.5
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 4.4e-10 69.3 104 48.1
Lsat_1_v5_gn_5_108861 Lactuca sativa HOM05D007310 ORTHO05D002375 1.7e-09 67.4 67 49.3
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 4.8e-09 65.9 160 38.8
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 1.4e-08 64.3 118 39.0
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 1.8e-08 63.9 130 36.9
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 2.4e-08 63.5 198 30.8
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 2.4e-08 63.5 120 40.8
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 3.1e-08 63.2 140 36.4
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 4.1e-08 62.8 187 32.6
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 7.0e-08 62.0 111 36.0
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 1.6e-07 60.8 159 35.8
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 2.0e-07 60.5 157 26.8
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 3.5e-07 59.7 123 37.4
Ah.01g024090 Amaranthus hybridus HOM05D007310 ORTHO05D002375 1.0e-06 58.2 123 39.0
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.0e-06 58.2 109 37.6
Zm00001eb027840 Zea mays HOM05D007310 ORTHO05D002375 1.3e-06 57.8 102 42.2
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.2e-06 57.0 109 37.6
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.2e-06 57.0 109 37.6
Actinidia10351 Actinidia chinensis HOM05D007310 ORTHO05D002375 2.9e-06 56.6 145 37.9
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 3.8e-06 56.2 130 36.9
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 3.8e-06 56.2 121 35.5
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 6.5e-06 55.5 154 32.5
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 6.5e-06 55.5 103 40.8


User provided reference genes

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