Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 1.4e-96 356.3 181 100.0
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 9.1e-72 273.9 194 77.3
RcHm_v2.0_Chr0c11g0499381 Rosa chinensis HOM05D007421 ORTHO05D009203 5.9e-55 218.0 111 100.0
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 1.1e-45 187.2 111 89.2
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 1.1e-45 187.2 111 89.2
RcHm_v2.0_Chr7g0231151 Rosa chinensis HOM05D007421 ORTHO05D009203 1.4e-43 180.3 120 80.0
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 5.7e-42 174.9 179 60.3
RcHm_v2.0_Chr7g0236421 Rosa chinensis HOM05D007421 ORTHO05D009203 5.7e-42 174.9 118 79.7
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 1.1e-40 170.6 218 53.2
FvH4_5g35251 Fragaria vesca HOM05D007421 ORTHO05D009203 3.3e-37 159.1 153 62.7
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.7e-33 145.6 237 46.8
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 6.4e-33 144.8 237 46.4
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.1e-32 144.1 232 47.8
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 3.0e-22 109.4 145 49.0
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 9.5e-21 104.4 144 47.9
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 2.0e-18 96.7 154 42.9
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 9.9e-18 94.4 137 46.7
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 2.7e-15 86.3 149 38.3
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 2.7e-15 86.3 149 38.3
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 6.0e-15 85.1 138 43.5
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 1.3e-14 84.0 181 36.5
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 5.1e-14 82.0 148 39.9
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 3.3e-13 79.3 144 39.6
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 7.3e-13 78.2 144 38.9
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 7.3e-13 78.2 166 40.4
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 9.6e-13 77.8 162 35.8
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 9.6e-13 77.8 142 41.5
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 1.6e-12 77.0 157 40.1
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 4.7e-12 75.5 167 34.7
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.4e-11 73.9 183 35.0
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 4.0e-11 72.4 98 45.9
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 4.0e-11 72.4 156 39.7
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 5.2e-11 72.0 188 35.1
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 6.8e-11 71.6 167 36.5
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 6.8e-11 71.6 122 36.1
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 1.2e-10 70.9 144 39.6
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.0e-10 70.1 167 33.5
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 2.0e-10 70.1 149 35.6
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 2.0e-10 70.1 149 35.6
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 3.4e-10 69.3 167 34.1
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 3.4e-10 69.3 186 31.7
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 5.8e-10 68.6 142 37.3
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 5.8e-10 68.6 139 36.0
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 5.8e-10 68.6 189 28.0
FAN25G2641 Fragaria x ananassa HOM05D007421 ORTHO05D009203 7.6e-10 68.2 49 79.6
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 1.7e-09 67.0 139 34.5
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.7e-09 67.0 165 33.9
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.7e-09 67.0 188 28.7
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 2.9e-09 66.2 157 33.8
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 2.4e-08 63.2 146 31.5
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 4.2e-08 62.4 139 34.5
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 4.2e-08 62.4 141 36.9
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 4.2e-08 62.4 172 36.0
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 5.4e-08 62.0 115 41.7
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 1.6e-07 60.5 156 35.3
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 1.6e-07 60.5 177 29.9
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 1.6e-07 60.5 146 34.2
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 2.1e-07 60.1 151 33.8
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 2.1e-07 60.1 174 29.3
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 2.7e-07 59.7 157 36.3
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 3.5e-07 59.3 149 28.9
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 4.6e-07 58.9 151 29.1
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 4.6e-07 58.9 152 31.6
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 7.8e-07 58.2 156 34.0
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 1.0e-06 57.8 87 43.7
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 1.0e-06 57.8 154 32.5
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 1.3e-06 57.4 167 34.1
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 3.9e-06 55.8 165 28.5


User provided reference genes

Program Settings