Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c11g0499331 Rosa chinensis HOM05D002804 ORTHO05D025537 6.4e-35 150.2 77 100.0
RcHm_v2.0_Chr0c11g0499551 Rosa chinensis HOM05D002804 ORTHO05D025537 6.4e-35 150.2 77 100.0
RcHm_v2.0_Chr7g0236111 Rosa chinensis HOM05D002804 ORTHO05D025537 6.4e-35 150.2 77 100.0
RcHm_v2.0_Chr7g0236621 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-28 129.4 77 85.7
FvH4_5g35071 Fragaria vesca HOM05D002804 ORTHO05D025537 2.0e-28 128.6 75 85.3
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-25 119.0 77 79.2
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 7.4e-23 110.2 77 72.7
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 7.4e-23 110.2 77 75.3
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 9.6e-23 109.8 75 77.3
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-22 107.8 77 75.3
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 6.3e-22 107.1 77 70.1
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-21 105.5 77 70.1
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.1e-21 104.8 77 71.4
FvH4_5g31002 Fragaria vesca HOM05D002804 ORTHO05D003755 4.5e-20 100.9 77 68.8
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.0e-19 97.4 75 70.7
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-18 95.9 77 64.9
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 4.2e-18 94.4 77 67.5
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 5.5e-18 94.0 75 62.7
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.5e-18 94.0 75 62.7
FAN15G3641 Fragaria x ananassa HOM05D002804 ORTHO05D010609 2.1e-17 92.0 70 70.0
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 6.1e-17 90.5 77 66.2
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-16 88.6 71 62.0
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-16 88.2 77 63.6
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-16 88.2 77 63.6
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.9e-16 87.8 70 61.4
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.1e-16 87.4 70 61.4
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.7e-16 87.0 70 61.4
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-15 85.5 77 62.3
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 2.5e-15 85.1 77 61.0
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-15 85.1 73 56.2
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-15 84.7 77 62.3
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 4.3e-15 84.3 73 56.2
FAN25G3079 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-14 80.9 75 58.7
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 1.4e-13 79.3 77 53.2
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-13 79.3 77 57.1
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-13 79.3 91 51.6
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-13 79.3 58 70.7
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 1.8e-13 79.0 77 55.8
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 2.4e-13 78.6 61 68.9
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-13 78.2 64 65.6
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-12 76.3 58 69.0
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 3.4e-12 74.7 54 72.2
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 4.5e-12 74.3 58 69.0
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-12 74.3 58 69.0
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 5.9e-12 73.9 58 67.2
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-12 73.6 74 55.4
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-11 72.4 77 51.9
FAN04G0322 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-11 72.0 75 52.0
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 2.9e-11 71.6 77 55.8
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-11 71.2 62 64.5
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-10 69.3 54 68.5
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-10 68.9 58 63.8
FAN10G1430 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-10 68.9 58 62.1
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-10 68.9 58 62.1
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 2.5e-10 68.6 58 62.1
FvH4_7g09010 Fragaria vesca HOM05D002804 ORTHO05D003755 5.5e-10 67.4 50 64.0
FAN06G4567 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.5e-10 67.4 50 64.0
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 5.5e-10 67.4 58 65.5
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-09 65.9 57 59.6
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 2.7e-09 65.1 56 58.9
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 2.7e-09 65.1 57 56.1
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.1e-09 63.9 59 61.0
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.9e-09 63.5 52 59.6
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.9e-09 63.5 58 56.9
FAN03G0432 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.0e-08 63.2 52 59.6
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-08 62.0 49 61.2
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 3.0e-08 61.6 58 58.6
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 5.1e-08 60.8 73 45.2
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 6.7e-08 60.5 73 45.2
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 6.7e-08 60.5 70 47.1
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 8.8e-08 60.1 73 45.2
FAN10G0048 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-07 59.7 52 55.8
FAN10G1037 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-07 58.5 52 55.8
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-07 58.2 73 43.8
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 7.4e-07 57.0 73 42.5
FAN21G0703 Fragaria x ananassa HOM05D002804 ORTHO05D200337 7.4e-07 57.0 45 62.2
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.7e-07 56.6 47 61.7
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-06 55.8 73 41.1
FAN05G0512 Fragaria x ananassa HOM05D002804 ORTHO05D025537 3.7e-06 54.7 73 43.8
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.7e-06 54.7 73 41.1
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.3e-06 53.9 36 66.7
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.2e-06 53.5 70 41.4


User provided reference genes

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