Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0235931 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-98 362.5 209 100.0
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 7.0e-68 261.2 216 68.1
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-63 246.9 201 67.2
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-52 209.9 214 56.5
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 9.2e-44 181.0 200 55.0
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-41 172.6 201 53.7
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-41 172.6 201 53.7
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 1.8e-39 166.8 200 52.0
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 9.0e-39 164.5 200 52.0
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.7e-37 160.2 202 50.0
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 3.8e-37 159.1 128 70.3
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 2.7e-35 152.9 211 49.3
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 6.0e-35 151.8 211 47.9
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-33 146.4 172 51.7
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-32 143.7 195 45.1
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 4.8e-32 142.1 207 42.5
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-31 141.0 207 41.5
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-31 140.6 201 42.8
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-30 137.5 207 40.6
RcHm_v2.0_Chr0c11g0499401 Rosa chinensis HOM05D002804 ORTHO05D022637 1.7e-29 133.7 162 52.5
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 2.2e-29 133.3 203 52.2
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-28 131.0 177 58.2
FvH4_5g31150 Fragaria vesca HOM05D002804 ORTHO05D022637 1.9e-28 130.2 127 55.1
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 1.6e-27 127.1 194 41.2
FAN13G2413 Fragaria x ananassa HOM05D002804 ORTHO05D022637 2.1e-27 126.7 190 45.3
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.0e-26 124.4 207 40.6
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.0e-26 124.4 175 43.4
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-26 124.0 207 41.1
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 3.0e-26 122.9 207 40.1
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 5.1e-26 122.1 201 38.8
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 1.3e-24 117.5 211 49.3
FAN08G1393 Fragaria x ananassa HOM05D002804 ORTHO05D029665 4.8e-24 115.5 174 42.5
FAN18G1408 Fragaria x ananassa HOM05D002804 ORTHO05D022637 4.8e-24 115.5 167 47.3
RcHm_v2.0_Chr7g0218381 Rosa chinensis HOM05D002804 ORTHO05D003755 8.1e-24 114.8 187 40.6
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-23 114.0 195 39.5
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-23 114.0 172 45.3
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-23 113.6 195 38.5
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 2.4e-23 113.2 207 38.6
FvH4_5g35254 Fragaria vesca HOM05D002804 ORTHO05D022637 4.0e-23 112.5 167 46.7
FvH4_5g34950 Fragaria vesca HOM05D002804 ORTHO05D003755 9.0e-23 111.3 165 39.4
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.0e-23 111.3 206 38.3
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 3.4e-22 109.4 199 45.7
RcHm_v2.0_Chr7g0236221 Rosa chinensis HOM05D002804 ORTHO05D341151 4.5e-22 109.0 89 68.5
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-20 104.4 213 35.2
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 1.4e-20 104.0 211 38.4
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 3.5e-19 99.4 182 48.4
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 4.6e-19 99.0 176 38.6
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 6.0e-19 98.6 154 45.5
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-18 97.4 120 50.8
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 3.0e-18 96.3 165 38.8
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 8.7e-18 94.7 199 36.7
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-17 94.4 127 44.9
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-17 92.8 120 55.8
FAN18G0121 Fragaria x ananassa HOM05D002804 ORTHO05D029665 1.6e-16 90.5 174 36.8
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 2.8e-16 89.7 174 35.6
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 8.2e-16 88.2 132 45.5
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-15 87.4 127 42.5
FAN04G3233 Fragaria x ananassa HOM05D002804 ORTHO05D025426 1.8e-15 87.0 162 51.2
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-15 87.0 174 34.5
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-15 87.0 174 34.5
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-15 86.7 120 47.5
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-15 86.3 177 36.7
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.0e-15 85.9 178 34.3
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.9e-15 85.1 177 34.5
FvH4_5g32080 Fragaria vesca HOM05D002804 ORTHO05D029665 1.2e-14 84.3 157 36.3
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-14 84.3 177 43.5
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-14 82.4 211 32.2
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.0e-13 81.3 164 43.9
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-13 79.3 133 39.1
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-13 79.3 173 35.3
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 6.5e-13 78.6 161 35.4
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 2.5e-12 76.6 163 44.2
FAN08G0149 Fragaria x ananassa HOM05D002804 ORTHO05D029665 4.2e-12 75.9 114 41.2
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 5.5e-12 75.5 116 37.9
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 9.3e-12 74.7 146 47.3
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 1.6e-11 73.9 147 44.2
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 6.1e-11 72.0 163 42.9
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 7.9e-11 71.6 142 38.0
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 7.9e-11 71.6 142 38.0
RcHm_v2.0_Chr4g0419921 Rosa chinensis HOM05D002804 ORTHO05D003755 1.0e-10 71.2 120 41.7
RcHm_v2.0_Chr4g0420021 Rosa chinensis HOM05D002804 ORTHO05D003755 1.0e-10 71.2 120 41.7
FvH4_5g05700 Fragaria vesca HOM05D002804 ORTHO05D003755 2.3e-10 70.1 153 37.3
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 3.9e-10 69.3 141 41.1
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 3.9e-10 69.3 149 33.6
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 3.9e-10 69.3 149 33.6
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 5.1e-10 68.9 147 41.5
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 5.1e-10 68.9 94 46.8
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 6.7e-10 68.6 147 44.2
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 1.5e-09 67.4 140 34.3
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.9e-09 67.0 163 41.7
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 5.7e-09 65.5 165 39.4
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.7e-09 64.7 149 33.6
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 9.7e-09 64.7 163 39.9
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-08 63.9 194 28.9
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 2.2e-08 63.5 138 33.3
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-08 62.4 161 41.0
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 4.8e-08 62.4 172 40.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.1e-07 61.2 163 37.4
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 1.4e-07 60.8 149 30.9
RcHm_v2.0_Chr7g0236631 Rosa chinensis HOM05D002804 ORTHO05D029636 1.4e-07 60.8 106 39.6
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 1.8e-07 60.5 147 32.0
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.8e-07 60.5 88 38.6
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-07 60.5 138 32.6
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 1.8e-07 60.5 170 30.0
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 2.4e-07 60.1 145 42.1
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-07 60.1 116 37.9
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 3.1e-07 59.7 116 37.9
FAN13G1594 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.1e-07 59.7 174 28.7
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 3.1e-07 59.7 172 40.1
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 4.1e-07 59.3 87 39.1
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 6.9e-07 58.5 161 41.0
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.0e-07 58.2 138 32.6
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.0e-07 58.2 161 30.4
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-06 57.4 161 29.8
RcHm_v2.0_Chr7g0230641 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-06 57.0 71 42.3
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 2.6e-06 56.6 161 29.8
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 4.5e-06 55.8 147 39.5
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 7.7e-06 55.1 179 35.8
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 1.0e-05 54.7 147 40.1


User provided reference genes

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