Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0235391 Rosa chinensis HOM05D011311 ORTHO05D020648 1.4e-68 263.1 153 100.0
FvH4_6g32751 Fragaria vesca HOM05D000030 ORTHO05D020648 1.5e-22 110.2 88 55.7
FvH4_3g32841 Fragaria vesca HOM05D000030 ORTHO05D020648 1.9e-22 109.8 88 55.7
FAN22G0785 Fragaria x ananassa HOM05D000030 ORTHO05D020648 3.3e-22 109.0 88 55.7
FvH4_2g18091 Fragaria vesca HOM05D000030 ORTHO05D000009 1.6e-21 106.7 72 66.7
RcHm_v2.0_Chr6g0251881 Rosa chinensis HOM05D000030 ORTHO05D000009 2.3e-20 102.8 73 60.3
RcHm_v2.0_Chr5g0038441 Rosa chinensis HOM05D000030 ORTHO05D000009 7.5e-19 97.8 86 52.3
FvH4_1g29581 Fragaria vesca HOM05D000030 ORTHO05D000031 9.8e-19 97.4 73 56.2
FAN07G0457 Fragaria x ananassa HOM05D011311 ORTHO05D000009 3.7e-18 95.5 90 55.6
RcHm_v2.0_Chr3g0496331 Rosa chinensis HOM05D000030 ORTHO05D000009 6.4e-18 94.7 86 51.2
FvH4_1g17901 Fragaria vesca HOM05D000030 ORTHO05D000031 1.1e-17 94.0 73 53.4
FvH4_2g26902 Fragaria vesca HOM05D000030 ORTHO05D000009 1.4e-17 93.6 66 65.2
FvH4_3g17731 Fragaria vesca HOM05D000030 ORTHO05D000031 5.4e-17 91.7 89 49.4
FAN25G3837 Fragaria x ananassa HOM05D000030 ORTHO05D020648 3.0e-15 85.9 54 70.4
Lj2C73T8 Lonicera japonica HOM05D011311 ORTHO05D000009 3.0e-15 85.9 67 53.7
FAN20G2390 Fragaria x ananassa HOM05D000030 ORTHO05D020648 1.1e-14 84.0 73 50.7
Lj8P480T12 Lonicera japonica HOM05D011311 ORTHO05D000009 4.3e-14 82.0 67 50.7
FAN12G0141 Fragaria x ananassa HOM05D000030 ORTHO05D013601 1.2e-13 80.5 88 43.2
FAN11G2172 Fragaria x ananassa HOM05D000030 ORTHO05D013601 2.1e-13 79.7 137 35.8
SGA_v2.0_scaffold2G01199 Striga asiatica HOM05D000030 ORTHO05D000009 1.1e-12 77.4 79 49.4
Lj5P277T26 Lonicera japonica HOM05D011311 ORTHO05D000009 4.0e-12 75.5 76 46.1
FvH4_4g10395 Fragaria vesca HOM05D000030 ORTHO05D000009 1.2e-11 73.9 142 33.8
FvH4_6g28381 Fragaria vesca HOM05D000030 ORTHO05D013601 1.2e-11 73.9 88 39.8
Lj5P369T32 Lonicera japonica HOM05D011311 ORTHO05D000009 1.5e-11 73.6 79 45.6
Lj3P1011T16 Lonicera japonica HOM05D011311 ORTHO05D000009 5.8e-11 71.6 81 44.4
FAN19G0008 Fragaria x ananassa HOM05D000030 ORTHO05D013601 7.6e-11 71.2 130 33.1
FvH4_4g16142 Fragaria vesca HOM05D000030 ORTHO05D000009 2.2e-10 69.7 71 45.1
FvH4_6g30963 Fragaria vesca HOM05D000030 ORTHO05D013601 2.2e-10 69.7 71 40.8
FvH4_c5g00011 Fragaria vesca HOM05D000030 ORTHO05D013601 2.2e-10 69.7 135 32.6
Lj1P505T9 Lonicera japonica HOM05D011311 ORTHO05D000009 2.9e-10 69.3 79 45.6
Lju3616C0T1 Lonicera japonica HOM05D011311 ORTHO05D000009 2.9e-10 69.3 79 45.6
FvH4_2g05022 Fragaria vesca HOM05D000030 ORTHO05D000009 3.8e-10 68.9 142 31.7
Lj7P526T73 Lonicera japonica HOM05D011311 ORTHO05D000009 3.8e-10 68.9 61 47.5
Lj3P609T9 Lonicera japonica HOM05D011311 ORTHO05D000009 4.9e-10 68.6 81 44.4
FAN11G3199 Fragaria x ananassa HOM05D000030 ORTHO05D013601 1.4e-09 67.0 135 31.9
FAN22G0310 Fragaria x ananassa HOM05D000030 ORTHO05D013601 1.9e-09 66.6 135 32.6
RcHm_v2.0_Chr5g0016291 Rosa chinensis HOM05D000030 ORTHO05D000009 1.9e-09 66.6 93 37.6
FvH4_5g32181 Fragaria vesca HOM05D000030 ORTHO05D013601 5.4e-09 65.1 135 31.1
RcHm_v2.0_Chr4g0391261 Rosa chinensis HOM05D000030 ORTHO05D000009 7.1e-09 64.7 42 61.9
FAN12G0238 Fragaria x ananassa HOM05D000030 ORTHO05D013601 2.3e-07 59.7 64 39.1
Hma1.2p1_0018F.1_g012300 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 3.9e-07 58.9 80 40.0
Hma1.2p1_0451F.1_g155750 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 3.9e-07 58.9 80 40.0
FAN05G3036 Fragaria x ananassa HOM05D000030 ORTHO05D020648 5.1e-07 58.5 57 47.4
Hma1.2p1_0875F.1_g231530 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 5.1e-07 58.5 78 39.7
Hma1.2p1_1597F.1_g292850 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 5.1e-07 58.5 78 39.7
Rhsim13G0111700 Rhododendron simsii HOM05D000030 ORTHO05D013153 5.1e-07 58.5 80 37.5
Hma1.2p1_0073F.1_g038490 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 6.6e-07 58.2 78 38.5
Atru.chr1.2973 Acer truncatum HOM05D000030 ORTHO05D000009 8.6e-07 57.8 72 38.9
Hma1.2p1_0081F.1_g042310 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 8.6e-07 57.8 68 41.2
Hma1.2p1_0663F.1_g198780 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 8.6e-07 57.8 75 40.0
RcHm_v2.0_Chr3g0477151 Rosa chinensis HOM05D011311 ORTHO05D345926 1.5e-06 57.0 45 62.2
Hma1.2p1_0123F.1_g057940 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 1.9e-06 56.6 68 41.2
Hma1.2p1_0935F.1_g238560 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 1.9e-06 56.6 68 41.2
FvH4_3g23651 Fragaria vesca HOM05D016514 ORTHO05D013153 2.5e-06 56.2 80 35.0
Lj2P100T19 Lonicera japonica HOM05D011311 ORTHO05D000009 4.3e-06 55.5 45 48.9
CANSAT35G1459 Cannabis sativa HOM05D000030 ORTHO05D000009 5.6e-06 55.1 75 41.3
FvH4_1g22352 Fragaria vesca HOM05D000030 ORTHO05D000009 5.6e-06 55.1 78 35.9
FvH4_5g34031 Fragaria vesca HOM05D000030 ORTHO05D000009 5.6e-06 55.1 78 35.9
MELO3C030184.2 Cucumis melo HOM05D000030 ORTHO05D000009 7.3e-06 54.7 75 34.7
CsaV3_5G011020 Cucumis sativus L. HOM05D013694 ORTHO05D016142 7.3e-06 54.7 86 36.0
FvH4_5g23881 Fragaria vesca HOM05D012654 ORTHO05D015056 7.3e-06 54.7 68 41.2


User provided reference genes

Program Settings